View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_17 (Length: 401)
Name: NF8100_low_17
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 75 - 394
Target Start/End: Complemental strand, 9249484 - 9249176
Alignment:
| Q |
75 |
tcatgttctcgactcttctaacaccatgttgctaataccacttaatttagcgccatatctatacacatttataaaatatttatacaagtctttttcttaa |
174 |
Q |
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| T |
9249484 |
tcatgttgtcggctcttctaacacaacatcgctaataccacttaatttagaaccatatttatacacatttata-----------caagtctttttcttaa |
9249396 |
T |
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| Q |
175 |
ggactagattattttctctcccttgatcattttaccttttactttacttttcttattcttcccaccaacatgatcctaaaacaaacaaaaagaaaaccaa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9249395 |
ggactagattattttctctcccttgatcattttaccttttactttacttttcttattcttcccaccaacatgatcctaaaacaaacaaaaagaaaaccaa |
9249296 |
T |
|
| Q |
275 |
catcatgtcttatgtctccatcaatcttaccatcttaccacccaatccaattgtctttcataatttccctctcaaccaaactcttcattttctctctact |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9249295 |
catcatgtcttatgtctccatcaatcttaccatcttaccacccaatccaattgtctttcataatttccctctcaaccaaactcttcattttctctctact |
9249196 |
T |
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| Q |
375 |
ttcaattcctccttcttctc |
394 |
Q |
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|||||||||||||||||||| |
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| T |
9249195 |
ttcaattcctccttcttctc |
9249176 |
T |
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