View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_19 (Length: 397)
Name: NF8100_low_19
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 29 - 382
Target Start/End: Complemental strand, 23873155 - 23872801
Alignment:
| Q |
29 |
agcagagactatattatgatgggtgaatagtttagttgcaccactttatatacttggtaaatttttgaattatttcatgtcaacatcgcaacaagctcga |
128 |
Q |
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| T |
23873155 |
agcaaagactatattatgatgggtgaatagtttagttgcaccactttatatacttggtaaatttttgaattatttcatgtcaacatcgcaacaagctcga |
23873056 |
T |
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| Q |
129 |
tgaccggaaacacatcgagtgcaactacaaccgtaatttaaaaccacgttctacatttttctgttacaaaaaccatg-nnnnnnnnngaaacagac-nnn |
226 |
Q |
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| T |
23873055 |
tgaccggaaacacatcgagtgcaactacaatcgtaatttaaaaccacgttctacattttttggtta-aaaaaccatgttttttttttgaaacagacaaaa |
23872957 |
T |
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| Q |
227 |
nnnnnccatgctatactattaattgttaaatattatgattaagtgattatttgacacattcaataaaaaattcagataatattaaaaaatatgtttttta |
326 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23872956 |
aaaaaccatgttatactattaattgttaaatattatgattaagtgattatttgacacattcaataaaaaattcagataatattaaaaaatatatttttta |
23872857 |
T |
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| Q |
327 |
ctatttacgcaagagtcattttgtaaccattttagataaacaaatatataatattt |
382 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
23872856 |
ctatttacgcaagagtcattttgttaccattttagataaacaaatatataatattt |
23872801 |
T |
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