View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_2 (Length: 673)
Name: NF8100_low_2
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 507; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 23 - 655
Target Start/End: Original strand, 31502483 - 31503126
Alignment:
| Q |
23 |
atgtcaatgagtttttgtgtgtcgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggc |
122 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31502483 |
atgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggc |
31502582 |
T |
|
| Q |
123 |
tttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctagaacttccctcttgaatataatttctcaatag |
222 |
Q |
| |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31502583 |
tttggagaaagtaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctagaacttccctcttgaatataatttctcaatag |
31502682 |
T |
|
| Q |
223 |
gacattttcagtggcaannnnnnngt--ctaaatcctgcaagctatccatgttttagtcggaatctgcttgaggattgaatatttttagcttagtgaaaa |
320 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31502683 |
gacattttcagtggcaatttttttttttctaaatcctgcaagctatccatgttttagtcggaatctgcttgaggattgaatatttttagcttagtgaaaa |
31502782 |
T |
|
| Q |
321 |
attcatttgtaatacaatgaaatgcaaagaaaatttgtattctctttaattaggtgtcttgtgctaaccattgttttttctcaatcaaataacatcagtc |
420 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31502783 |
attcatttgtaatacaatgaaatgcaaagaaaatttgtattctctttaattaggtgtcttgtgctaaccattgttttttctcaatcaaataacatcagtc |
31502882 |
T |
|
| Q |
421 |
acgtatcttaaaattgtaaaactaattatactcaacccttatatatttcagcttaattgttatggaaactccgtgatattgtcg--------tcatatct |
512 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31502883 |
acgtatcttaaaattgtaaaactaattatactcaaccctaatatatttcggcttaattgttatggaaactccgtgatattgtcgtcatatactcatatct |
31502982 |
T |
|
| Q |
513 |
ttttcttgaacaatttgatctcacaaacataaatcagagattacaaaacaaagacgtcatatatagatgaaactcaaaaatcattat-aaaggcactaat |
611 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||| |
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| T |
31502983 |
ttttcttgaacgatttgatctcacaaacagaaatcagagatcacaaaacaaagacgtcgtatatagatgaaactcaaaaatcattataaaatacaccaat |
31503082 |
T |
|
| Q |
612 |
acatccatcacgtacctaagacctaccttcaacatgcatgagaa |
655 |
Q |
| |
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||| ||||||| |||| ||||||||||||||||| ||||||||| |
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| T |
31503083 |
acacccatcacatacccaagacctaccttcaacacgcatgagaa |
31503126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 23 - 311
Target Start/End: Original strand, 31477119 - 31477406
Alignment:
| Q |
23 |
atgtcaatgagtttttgtgtgtcgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggc |
122 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |
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| T |
31477119 |
atgtcaatgagtttttgtgtgttgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacttgcaggcttcacatgaaagattagaggc |
31477218 |
T |
|
| Q |
123 |
tttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctagaacttccctcttgaatataatttctcaatag |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
31477219 |
tttggagaatgcaattgaaagtattgagaatgatttggagaacttatttaggcgcttgataaaatctagagcttccctcttgaatataatttctcaatag |
31477318 |
T |
|
| Q |
223 |
gaca-ttttcagtggcaannnnnnngtctaaatcctgcaagctatccatgttttagtcggaatctgcttgaggattgaatatttttagct |
311 |
Q |
| |
|
|| |||||| || ||| ||| |||||||||||| |||||||||||||| || || |||||||||||||||||||||||||| |
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| T |
31477319 |
accatttttcattgacaatttttt--tcttaatcctgcaagccatccatgttttagtagggatttgcttgaggattgaatatttttagct |
31477406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 31467290 - 31467472
Alignment:
| Q |
40 |
tgtgtcgaagctaccttaagcactcttttaagtgaaggtactaatggagaaaacatgcaggctgcacatgaaagattggaggctttggagaatgcaattg |
139 |
Q |
| |
|
||||| |||||||| |||| || |||||||||||| |||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31467290 |
tgtgtggaagctactttaaatacccttttaagtgaatccactattggcgaaaagtttcaggctgcacatgaaagattggaggctttggagaatgcaattg |
31467389 |
T |
|
| Q |
140 |
aaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctagaacttccctcttgaatataatttctcaatag |
222 |
Q |
| |
|
||||||||||||||||||| || ||||||||||| | ||| |||||| |||| | ||||||||||| ||||| ||||||||| |
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|
| T |
31467390 |
aaagtattgagaatggtttagagaacttatttagacacttaattaaaattagatcctccctcttgaacataatctctcaatag |
31467472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 31477426 - 31477470
Alignment:
| Q |
318 |
aaaattcatttgtaatacaatgaaatgcaaagaaaatttgtattc |
362 |
Q |
| |
|
|||||||| | | |||||||||||||||||||||||||||||||| |
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|
| T |
31477426 |
aaaattcaatggcaatacaatgaaatgcaaagaaaatttgtattc |
31477470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9301243 - 9301153
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || || |||||||||| ||| ||||| ||||| |
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|
| T |
9301243 |
tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcgtttggttaaaactaga |
9301153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 9329391 - 9329481
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||| || |||||||| ||||| |||||||||| ||| ||||| ||||| |
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|
| T |
9329391 |
tgcacatgaaagatttgaggctttggagaatgcagttgaaagtatagaaaatggtttagaaaatatatttaggcgtttggttaaaactaga |
9329481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9331659 - 9331569
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| || || |||||||||| ||| ||||| ||||| |
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|
| T |
9331659 |
tgcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttaggcgtttggttaaaactaga |
9331569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9351387 - 9351297
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||| || || |||||||||| ||| ||||| ||||| |
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|
| T |
9351387 |
tgcacatgaaggatttgaggctttggagaatgcaattgaaagtatagagaatggtttagagaatatatttaggcgtttggttaaaactaga |
9351297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9287898 - 9287808
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| || || ||||||||||| || |||||||||| ||| ||||| ||||| |
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|
| T |
9287898 |
tgcacatgaaagatttgaggctttggagaatgcaattgaaatgatagaaaatggtttggagaatgtatttaggcgtttggttaaaactaga |
9287808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9292421 - 9292331
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| || || ||||| || || |||||||||| ||| ||||| ||||| |
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|
| T |
9292421 |
tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaagggtttagagaatatatttaggcgtttggttaaaactaga |
9292331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9304861 - 9304771
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||||||||||| || |||||||| || || |||||||||| ||| ||||| ||||| |
|
|
| T |
9304861 |
tgcacatgaaagatttgaggctttcgagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcgtttggttaaaactaga |
9304771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 9374136 - 9374226
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| || || |||||||| | ||| ||||| ||||| |
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|
| T |
9374136 |
tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggtgtttggttaaaactaga |
9374226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 9297028 - 9296938
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||| || || ||||||||| ||| ||||| ||||| |
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|
| T |
9297028 |
tgcacatgatagatttgaggctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggcatttggttaaaactaga |
9296938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 9349635 - 9349725
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||||||||| || |||||||| || || |||||||| | ||| ||||| ||||| |
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|
| T |
9349635 |
tgcacatgaaagatttgaagctttggagaatgcaattgaaagtatagaaaatggtttagagaatatatttaggggtttggttaaaactaga |
9349725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 9357014 - 9357104
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| || || ||||| || || |||||||| | ||| ||||| ||||| |
|
|
| T |
9357014 |
tgcacatgaaagatttgaggctttggagaatgcaattgaaagtatagaaaagggtttagagaatatatttaggtgtttggttaaaactaga |
9357104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 9368242 - 9368332
Alignment:
| Q |
102 |
tgcacatgaaagattggaggctttggagaatgcaattgaaagtattgagaatggtttggaaaacttatttaggcgcttgattaaatctaga |
192 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||| || || |||||||| | ||| ||||| ||||| |
|
|
| T |
9368242 |
tgcacgtgaaagatttgaggctttggagaatgcaattgaaatgattgaaaatggtttagagaatatatttaggtgtttggttaaaactaga |
9368332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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