View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8100_low_24 (Length: 373)
Name: NF8100_low_24
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_24 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 52798572 - 52798926
Alignment:
| Q |
1 |
aatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatggtgtgtgatgaaacaatatcagat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
52798572 |
aatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatagcgtgtgatgaaacgatatcagat |
52798671 |
T |
|
| Q |
101 |
ggacnnnnnnnnctacacttagtttttattaatatggagaaaacaattgatagagcatcaagagagatttgtggaaaatcatatagaagaaagaggttgg |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
52798672 |
ggacaaaaaatactacacttagtttttattaatatggagaaaacaattgatagatcaccaagagagatttgtggaaaatcatatagaagaaagaggttag |
52798771 |
T |
|
| Q |
201 |
tgttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagagagccgactcaattattct |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
52798772 |
ggttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagagggccgactcaattattct |
52798871 |
T |
|
| Q |
301 |
atgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaag |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52798872 |
atgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaag |
52798926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 50630495 - 50630446
Alignment:
| Q |
21 |
aaccaatttgattttatgttagagagatcgaccatggaagctatctactt |
70 |
Q |
| |
|
|||||||||||||||||| | | ||| |||||||||||||| |||||||| |
|
|
| T |
50630495 |
aaccaatttgattttatgcttgcgaggtcgaccatggaagcaatctactt |
50630446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University