View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8100_low_27 (Length: 355)
Name: NF8100_low_27
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 19 - 325
Target Start/End: Complemental strand, 3438916 - 3438610
Alignment:
| Q |
19 |
agcaaaagttatcagcaagttctctccgcacaatcaactcctccaagaaagtgtcaacagcctttacaccaacattgaagaacagaaaaagttaagtcta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438916 |
agcaaaagttatcagcaagttctctccgcacaatcaactcctccaagaaagtgtcaacagcctttacaccaacattgaagaacagaaaaagttaagtcta |
3438817 |
T |
|
| Q |
119 |
agaaaagatctttaatcaccacttttttaggaaaaacaaaatgaagcaacataaacagcatagtaaaacaaacctgaggatatgaagctcgtagcttacg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438816 |
agaaaagatctttaatcaccacttttttaggaaaaacaaaatgaagcaacataaacagcatagtaaaacaaacctgaggatatgaagctcgtagcttacg |
3438717 |
T |
|
| Q |
219 |
agcttctaaagcacatctttgagcagatatctgtccaaaatgcaaatagggagataaaccagaaagtgcagttggtttacaagggttgttgcgatctgta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3438716 |
agcttctaaagcacatctttgagcagatatctgtccaaaatgcaaatagggagataaaccagaaagtgcagttggtttacaagggttgttgcgatctgta |
3438617 |
T |
|
| Q |
319 |
gaataat |
325 |
Q |
| |
|
||||||| |
|
|
| T |
3438616 |
gaataat |
3438610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University