View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8100_low_3 (Length: 654)

Name: NF8100_low_3
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8100_low_3
NF8100_low_3
[»] chr5 (1 HSPs)
chr5 (22-654)||(40556556-40557188)


Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 22 - 654
Target Start/End: Complemental strand, 40557188 - 40556556
Alignment:
Q  22 gcataccgacgatcttcttcctcccttttttcttttgaggcacataatccaaagacaattcctctgttggtgtcagaaagttctcttcaatcttacctat 121  Q
    ||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40557188 gcataccaacaatcttcttcctcccttttttattttgaggcacataatccaaagacaattcctctgttggtgtcagaaagttctcttcaatcttacctat 40557089  T
Q  122 tggaatggacaagcggctttgatctttgtccacgtcactcattgtcagttccttctggatcaccaacttcacctcacaacctcccatttgttccatcttt 221  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  40557088 tggaatggacaagcggctttgatctttgtccacgtcactcattgtcagttccttctggatcaccaacttcacctcacaaccttccatttgttcaatcttt 40556989  T
Q  222 tctttaaacaccaatggaagctccggtttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttct 321  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40556988 tctttaaacgccaatggaagctccggtttctcttcttgcacctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttct 40556889  T
Q  322 tgatctcctttttggaaccttcattggatgaagatccctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtcc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40556888 tgatctcctttttggaaccttcattggatgaagatccctcatgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtcc 40556789  T
Q  422 atcacttcttcttgtcttgataagttttttcccaacaccctcatcgcgtctacaatcagcaaccccgcgattctttgattcaagcataccatatttaaga 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40556788 atcacttcttcttgtcttgataagttttttcccaacaccctcatcgcgtctacaatcagtaaccccgcgattctttgattcaagcataccatatttaaga 40556689  T
Q  522 ctgctaaaatctcttgtcgctgattggttccttcnnnnnnncttggttattattttgtcaaaaccttcattgcatccacaaacaacgtcctcatgattct 621  Q
     |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40556688 atgctaaaatctcttgtcgctgattggttccttctttttttcttggttattattttgtcaaaaccttcattgcatccacaaacaacatcctcatgattct 40556589  T
Q  622 tctttgatcgcttacttcttttttccttcactg 654  Q
    |||||||||| ||||||||||||||||||||||    
T  40556588 tctttgatcggttacttcttttttccttcactg 40556556  T

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