View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8100_low_30 (Length: 341)
Name: NF8100_low_30
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 19 - 332
Target Start/End: Complemental strand, 28241255 - 28240942
Alignment:
| Q |
19 |
catccccgatgagggagttcgaactaaaggcaataacataattnnnnnnntctacaagttagagaaaggccaaactttgcaagactatctgcaatttcgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28241255 |
catccccgatgagggagttcgaactaaaggcagtaacataattaaaaaaatctacaagttagagaaaggccaaactttgcaagactatctgcaatttcgt |
28241156 |
T |
|
| Q |
119 |
cagcctctctaagaacatagttaatatgagaggtatcaaaactttttgtcctctcttcaattctttgaacaatcccaaatcaatcgtgggactgaacaca |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28241155 |
cagcctctctaagaacatagttaatatgagaggtatcagaactttttgtcctctcttcaattctttgaacaatcccaaatcaatcgtgggactgaacaca |
28241056 |
T |
|
| Q |
219 |
tcaattgttaatgacactgacagcaagcaataacccagagttctgcttgaatagaggaaacaaccatttgcatctctagactctagcaatgcctccacat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28241055 |
tcaattgttaatgacactgacagcaagcaataacccagagttctgcttgaatagaggaaacaaccatttgcatctctagactctagcaatgcctccacat |
28240956 |
T |
|
| Q |
319 |
gctaccggaactcc |
332 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
28240955 |
gctaccggaactcc |
28240942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University