View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_32 (Length: 321)
Name: NF8100_low_32
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_32 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 35 - 306
Target Start/End: Original strand, 54074441 - 54074712
Alignment:
| Q |
35 |
ttttcactcatatagaacatatgaatatgaaaccttcttcaccatcagattccaatatttccattaacaattcaacaaaaacattcattagtagtccttg |
134 |
Q |
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| T |
54074441 |
ttttcactcatatagaaaatatgaatatgaaaccttcttcaccatcagattccaatatttccattaacaattcaacaacaacattcattagtagtccttg |
54074540 |
T |
|
| Q |
135 |
ggaaaccatgcgacgaaaaccacgaacaaccctccttctttcattactttctattcttttatttgctgcattttctcttcatctctctcgtcacgccgtt |
234 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
54074541 |
ggaaaccatgcgacgaaaaccacgaacaaccctccttctttcattactttctattcttttatttgctgcattttctcttcatctctctcgtgatgccgtt |
54074640 |
T |
|
| Q |
235 |
tctggttggagccctgattacgacctagacgatcgtccatggaagctaaacgcaaaaaatcacgttgtcgtt |
306 |
Q |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54074641 |
tctggttggagacctgattacgaccttgacgatcgtccatggaagctaaacgcaaaaaatcacgttgtcgtt |
54074712 |
T |
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