View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_38 (Length: 276)
Name: NF8100_low_38
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_38 |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 108 - 276
Target Start/End: Complemental strand, 40292543 - 40292375
Alignment:
| Q |
108 |
ttgattattgatgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatg |
207 |
Q |
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| T |
40292543 |
ttgattattgatgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatg |
40292444 |
T |
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| Q |
208 |
gttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgaaagattagcggtttaagtggt |
276 |
Q |
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| T |
40292443 |
gttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtgcaagattagcggtttaagtggt |
40292375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 40292855 - 40292764
Alignment:
| Q |
18 |
atatattccaattagcagtaacataactgatgtaagtttcaattgtgatgaaggagagtttagatgaactttcattgtctttcttactactt |
109 |
Q |
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| T |
40292855 |
atatattccaattagcagtaacataactgatgtaagtttctattgtgatgaaggagagttcagatgaactttcatcgtctttcttactactt |
40292764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 254
Target Start/End: Complemental strand, 40285276 - 40285124
Alignment:
| Q |
102 |
tactacttgattattgatgttgcaatttgggctgctgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaatta |
201 |
Q |
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| T |
40285276 |
tactacttgattcttgatgaagcaatttgtgctgctgtggtttctgatcatggttgggattcttcacttttcagaacaactactggatgttgaaaggtta |
40285177 |
T |
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| Q |
202 |
cctatggttgtttcaatttctggcgaagttgcttttgaaaccccaatcaagtg |
254 |
Q |
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| T |
40285176 |
ccattgcttgttgcaatttctggcaacgttgtttctgaaaccccaattaagtg |
40285124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 224
Target Start/End: Complemental strand, 40258063 - 40257976
Alignment:
| Q |
137 |
tgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctgg |
224 |
Q |
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| T |
40258063 |
tgtggtttctgatcatccttgggattcttgttttttcagcacaactgttggatgaagaaatatttcccttggttgttgcaatttctgg |
40257976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 40272740 - 40272651
Alignment:
| Q |
159 |
gattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttgcttttgaaaccccaat |
248 |
Q |
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| T |
40272740 |
gattcttcacttttcagctcatctgatggatgcaaatatattacccagggttgttacaatttctggcagagttgtttgtgaagccccaat |
40272651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 276
Target Start/End: Original strand, 43461246 - 43461481
Alignment:
| Q |
37 |
aacataactgatgtaagtttcaattgtgatgaaggagagtttagatgaactttcattgtctttcttactacttgattattgatgttgcaatttgggctgc |
136 |
Q |
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| T |
43461246 |
aacataactgatgtaagtttatgcagtgatgaagtagagcttagatgaactttcattatctt----actacttgattattgatgttgcaatttgggatgc |
43461341 |
T |
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| Q |
137 |
tgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggatgcagaaaaattacctatggttgtttcaatttctggcgaagttgcttt |
236 |
Q |
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| T |
43461342 |
tgtggtttctgacgacgcttgggatttttcactttttagcacaactgttggatgcggaaaaattacccttggttgtttcaatttctgacgaagttgcttc |
43461441 |
T |
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| Q |
237 |
tgaaaccccaatcaagtgaaagattagcggtttaagtggt |
276 |
Q |
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| T |
43461442 |
tgaaaccccaatcaagtgcgagattagtagtttaagtggt |
43461481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 189
Target Start/End: Original strand, 7076371 - 7076519
Alignment:
| Q |
37 |
aacataactgatgtaagtttcaattgtgatgaaggagagtttagatgaactttcattgtctttcttactacttgattattgatgttgcaatttgggctgc |
136 |
Q |
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| T |
7076371 |
aacataactgatgtaagtttttgcagtgatgaagtagagcttagatgaagtttcattatctt----actacttgattattgatgttgcaatttgggccgc |
7076466 |
T |
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| Q |
137 |
tgtggtttctgatcacgcttgggattcttcacttttcagcacaactgttggat |
189 |
Q |
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| T |
7076467 |
cgtggtttctgacgacgctttggatttttcactttttagcacaattgttggat |
7076519 |
T |
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