View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_40 (Length: 249)
Name: NF8100_low_40
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_40 |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 42740595 - 42740359
Alignment:
| Q |
1 |
aacaactaatttatatctagggttggatactttgatttggacttggtcccaatgagtcaactaaatggattaatatctagggttgcattaaaatatgaaa |
100 |
Q |
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| T |
42740595 |
aacaactaatttatatctagggttggatactttgatttggacttgggcccaatgagtcaattaaatggattaatatctagggttgcattaaaatatgaaa |
42740496 |
T |
|
| Q |
101 |
attaataaaatctttagaggtttttcttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaaccggttgaactg |
200 |
Q |
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| T |
42740495 |
attaataaaatctttagaggtttttcttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaatcggttgaaccg |
42740396 |
T |
|
| Q |
201 |
atttaaccataaaccgaaggtctcatcggttcaatct |
237 |
Q |
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||| |||||| |||||||||||||||||||||||||| |
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| T |
42740395 |
attgaaccatgaaccgaaggtctcatcggttcaatct |
42740359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 21744797 - 21744565
Alignment:
| Q |
7 |
taatttatatctagggttggatactttgatttggacttggtcccaatgagtcaactaaatggattaatatctagggttgcattaaaatatgaaaattaat |
106 |
Q |
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| T |
21744797 |
taatttatatctagggttggatactttgatttggactaggggccaatgagtcaactaaatggattaatatctagggttgcattaaaatatgaaaattaat |
21744698 |
T |
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| Q |
107 |
aaaatctttagaggtttttcttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaaccggttgaactgatttaa |
206 |
Q |
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| T |
21744697 |
aaaatcttta-aggtttttcttgatttatcttcatatttatttattcattaaccggttcaataatggttcataacggtttaaccggttgaaccgattgaa |
21744599 |
T |
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| Q |
207 |
ccataaaccgaaggtctcatcggttcaatctctg |
240 |
Q |
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| T |
21744598 |
ccatgaaccgaagatctcatcggttcaatctctg |
21744565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 20218029 - 20218081
Alignment:
| Q |
188 |
accggttgaactgatttaaccataaaccgaaggtctcatcggttcaatctctg |
240 |
Q |
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| T |
20218029 |
accggttcaaccggttgaaccatgaaccgaaggtctcaccggttcaatctctg |
20218081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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