View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_41 (Length: 245)
Name: NF8100_low_41
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 223
Target Start/End: Complemental strand, 38005691 - 38005487
Alignment:
| Q |
19 |
aacatagttgttttatcaccttcgcttgagccacacggcactgttcgatcaacacgaagagctcgaatcgtcagcattgcattcgagttgttttacaaca |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
38005691 |
aacatcgttgttttatcaccttcgcttgagccacacggcactgttcgatcaacacgaagagctcgaatcgtcggcattgcatttgagttgttttacaaca |
38005592 |
T |
|
| Q |
119 |
aaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtataagaattttgaagatga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38005591 |
aaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtataagaattttgaagatga |
38005492 |
T |
|
| Q |
219 |
agacg |
223 |
Q |
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||||| |
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| T |
38005491 |
agacg |
38005487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 19 - 221
Target Start/End: Original strand, 26462122 - 26462324
Alignment:
| Q |
19 |
aacatagttgttttatcaccttcgcttgagccacacggcactgttcgatcaacacgaagagctcgaatcgtcagcattgcattcgagttgttttacaaca |
118 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
26462122 |
aacatcgttgttttatcgccttcgcttgagccacacggcactgttcggtcaacacgaagagctcgaatcgtaggcattgcattcgagttgttttacagca |
26462221 |
T |
|
| Q |
119 |
aaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtataagaattttgaagatga |
218 |
Q |
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|||| || ||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26462222 |
aaatatctgaaatgcctgtttcaccaaaaattgatttttgtaacttttgtaagatttgggctggtgaagatggtgacatgtataagaatttcgaagatga |
26462321 |
T |
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| Q |
219 |
aga |
221 |
Q |
| |
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||| |
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|
| T |
26462322 |
aga |
26462324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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