View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_47 (Length: 240)
Name: NF8100_low_47
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_47 |
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Alignment Details
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 587480 - 587279
Alignment:
| Q |
37 |
tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc |
136 |
Q |
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| T |
587480 |
tgtatcattcatgcccaactccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattc |
587381 |
T |
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| Q |
137 |
aaccatataccgcaagcggacaatattctcgaaagacatgcaacatattttcaacatctccacaatgataacaataaggatgtccaatccgcatatagtt |
236 |
Q |
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| T |
587380 |
aaccatataccgcaagcggacaacattctcgaaagacatgcaatatattttcaacatctcaacaatgataacaataaggatgtccaattggcatatagtt |
587281 |
T |
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| Q |
237 |
ca |
238 |
Q |
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|| |
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| T |
587280 |
ca |
587279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 32057965 - 32058052
Alignment:
| Q |
56 |
tccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccata |
143 |
Q |
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| T |
32057965 |
tccatgttcatatttaagccaatccaatgctgcaaatctgcttcaaaaaagttctctctttgattaataataactgtattcaaccata |
32058052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 147
Target Start/End: Original strand, 26799298 - 26799390
Alignment:
| Q |
55 |
ctccatgttcatatttaagtcaatccaattctgcaaatttgcttcaaaaaagttctctctttgattaatcctaattgtattcaaccatatacc |
147 |
Q |
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| T |
26799298 |
ctccatgctcaaatttaagtcaatccaatgctgcaaatatgcttcaaaaaagctctttctttgataaataccaactgtattcaaccatatacc |
26799390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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