View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_53 (Length: 224)
Name: NF8100_low_53
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_53 |
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| [»] scaffold0116 (2 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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Alignment Details
Target: scaffold0116 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 31261 - 31194
Alignment:
| Q |
13 |
tattattcttctattatttatttattttaaaatacttttgaatataagcataaaa-tttaggatgtta |
79 |
Q |
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| T |
31261 |
tattattattctattatttatttattttaaaatacttttgaatataagcataaaattttaggatgtta |
31194 |
T |
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Target: scaffold0116; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 13 - 70
Target Start/End: Complemental strand, 39794 - 39737
Alignment:
| Q |
13 |
tattattcttctattatttatttattttaaaatacttttgaatataagcataaaattt |
70 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39794 |
tattattattctattatttatttattttaaaatacttttgaatataagcataaaattt |
39737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 8249 - 8316
Alignment:
| Q |
13 |
tattattcttctattatttatttattttaaaatacttttgaatataagcataaaa-tttaggatgtta |
79 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8249 |
tattattattctattatttatttattttaaaatacttttgaatataagcataaaattttaggatgtta |
8316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 21622412 - 21622478
Alignment:
| Q |
13 |
tattattcttctattatttatttattttaaaatacttttgaatataagcataaaa-tttaggatgtta |
79 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||| |
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| T |
21622412 |
tattattattctattatttatttattttaatatacttttgaata-aagcataaaattttaggatgtta |
21622478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 21630756 - 21630823
Alignment:
| Q |
13 |
tattattcttctattatttatttattttaaaatacttttgaatataagcataaaa-tttaggatgtta |
79 |
Q |
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||||||| ||| |||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||| |
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| T |
21630756 |
tattattattcaattatttatttattttaatatacttttgaatattagcttaaaattttaggatgtta |
21630823 |
T |
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