View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_54 (Length: 223)
Name: NF8100_low_54
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 54436909 - 54437102
Alignment:
| Q |
20 |
acttattctgattagttaatcaagtatcaagcaagccatcataaactaaataaataaaaataatagtatcttccacaatacaactaaccacttt------ |
113 |
Q |
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| T |
54436909 |
acttattctgattagttaatcaagtatcaagcaagccatcataaactaaataaataaaaataatagtatcttccacaatacaactaaccactttattttc |
54437008 |
T |
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| Q |
114 |
---atttgatcacataactgttcttaacgtcaatgagaattacaacaaataagaataaaattcaagtacggtgtctgtccattacatacataataa |
206 |
Q |
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| T |
54437009 |
ataatttgatcacataactgttcttaacatcaatgagaattacaacagataagaataaaattcaagt--ggtgtctgtccattacatacataataa |
54437102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 177
Target Start/End: Original strand, 54443029 - 54443066
Alignment:
| Q |
140 |
tcaatgagaattacaacaaataagaataaaattcaagt |
177 |
Q |
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| T |
54443029 |
tcaaagagaattacaacaaataagaataaaattcaagt |
54443066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 117
Target Start/End: Original strand, 54442933 - 54442969
Alignment:
| Q |
81 |
aatagtatcttccacaatacaactaaccactttattt |
117 |
Q |
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| T |
54442933 |
aatattatcttccacaatataactaaccactttattt |
54442969 |
T |
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