View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8100_low_56 (Length: 215)

Name: NF8100_low_56
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8100_low_56
NF8100_low_56
[»] chr6 (25 HSPs)
chr6 (12-196)||(4570882-4571067)
chr6 (16-194)||(4585547-4585727)
chr6 (25-196)||(4606941-4607113)
chr6 (11-149)||(4557081-4557221)
chr6 (16-118)||(4560495-4560597)
chr6 (16-107)||(4480693-4480784)
chr6 (11-109)||(4574306-4574404)
chr6 (11-89)||(4579450-4579528)
chr6 (16-101)||(4504438-4504523)
chr6 (16-109)||(4592229-4592322)
chr6 (11-109)||(4563709-4563807)
chr6 (16-101)||(3171747-3171832)
chr6 (16-89)||(4516339-4516412)
chr6 (24-89)||(4598189-4598254)
chr6 (16-88)||(4490396-4490468)
chr6 (31-107)||(4505857-4505933)
chr6 (24-107)||(4492955-4493038)
chr6 (17-88)||(4568072-4568143)
chr6 (11-82)||(4613754-4613825)
chr6 (16-107)||(4617022-4617113)
chr6 (16-101)||(4392067-4392152)
chr6 (24-89)||(4267215-4267280)
chr6 (48-101)||(4299813-4299866)
chr6 (48-107)||(4601789-4601848)
chr6 (45-89)||(4622160-4622204)
[»] chr8 (3 HSPs)
chr8 (40-196)||(16686332-16686488)
chr8 (16-107)||(1674226-1674317)
chr8 (11-119)||(20863879-20863987)
[»] chr5 (2 HSPs)
chr5 (16-88)||(28000140-28000212)
chr5 (18-89)||(24103017-24103088)
[»] chr3 (1 HSPs)
chr3 (26-107)||(1281114-1281195)
[»] scaffold0288 (1 HSPs)
scaffold0288 (18-101)||(3762-3845)
[»] scaffold0477 (1 HSPs)
scaffold0477 (16-89)||(4727-4800)
[»] chr7 (1 HSPs)
chr7 (48-101)||(3086426-3086479)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 12 - 196
Target Start/End: Complemental strand, 4571067 - 4570882
Alignment:
Q  12 gagatgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatcaca 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4571067 gagatgaagaagaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaca 4570968  T
Q  112 cctaagtgccgttttt-atgcaatgtagtattatattgatccattgatcttctgctatcgaatttaagggatgatgctattgtagt 196  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  4570967 cctaagtgacgtttttaatgcaatgtagtattatattgatccattgatcttctgctattgaatttaagggatgaggctattgtagt 4570882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 16 - 194
Target Start/End: Complemental strand, 4585727 - 4585547
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatcacacc-- 113  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||      
T  4585727 tgaagaagaaggcggaggaggacacgagacctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaaccta 4585628  T
Q  114 taagtgccgtttttatgcaatgtagtattatattgatccattgatcttctgctatcgaatttaagggatgatgctattgta 194  Q
    ||||||   |||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||||||||    
T  4585627 taagtgaattttttatgcaatgtagtattatattgatccattgatattctcctactgaatttaagggatgatgctattgta 4585547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 4606941 - 4607113
Alignment:
Q  25 aggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatcacacctaagtg-ccgt 123  Q
    ||||||||| ||||| |||||| ||||||| ||||||||||||||||||||||||||||||| || ||||||||||| ||||||| ||||||||| |  |    
T  4606941 aggcggagggggacaagagaccaggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgacttt 4607040  T
Q  124 ttttatgcaatgtagtattatattgatccattgatcttctgctatcgaatttaagggatgatgctattgtagt 196  Q
    |||||||||||||| |||||| |||||||||||||||| | |||| ||||||||||||||||| || ||||||    
T  4607041 ttttatgcaatgtattattatgttgatccattgatcttttcctattgaatttaagggatgatgttaatgtagt 4607113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 4557221 - 4557081
Alignment:
Q  11 tgagatgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatcac 110  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||     
T  4557221 tgagatgaagacgaaggcggaggaggacacgagacctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaa 4557122  T
Q  111 acctaagtgcc--gtttttatgcaatgtagtattatattga 149  Q
    ||||||||| |   |||||||||||| |||||||| |||||    
T  4557121 acctaagtgacttttttttatgcaatttagtattacattga 4557081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 4560597 - 4560495
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatcacaccta 115  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||| ||||||| || ||    
T  4560597 tgaagaaaaaggcggaggtgtacacgagacctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacata 4560498  T
Q  116 agt 118  Q
    |||    
T  4560497 agt 4560495  T

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Target: chr6; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 4480784 - 4480693
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaat 107  Q
    ||||||| | ||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||| |||||    
T  4480784 tgaagaagatggcagaggaggacacaagacctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat 4480693  T

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Target: chr6; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 4574404 - 4574306
Alignment:
Q  11 tgagatgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatca 109  Q
    |||| ||||||| |||| ||||| ||||||||||||||| |||||||||||||  |||||||| ||||||||||||||| | ||||||||| |||||||    
T  4574404 tgagctgaagaagaaggtggaggtggacacgagacctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaatca 4574306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 4579528 - 4579450
Alignment:
Q  11 tgagatgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggag 89  Q
    |||| ||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||    
T  4579528 tgagttgaagaagaaggtggaggaggacacgagacctggaggctgttcatacatgaacttggagaaagtgattaaggag 4579450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 4504438 - 4504523
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaa 101  Q
    ||||||| ||||| ||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||  | |||||||||    
T  4504438 tgaagaagaaggcagaggaggacacaagacttggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 4592322 - 4592229
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatca 109  Q
    ||||||| ||||| |||||| ||||||||||||| ||||||||||| ||||||||||| ||| |||| |||||| | |||||||||||||||||    
T  4592322 tgaagaagaaggcagaggagaacacgagacctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatca 4592229  T

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Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 4563807 - 4563709
Alignment:
Q  11 tgagatgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatca 109  Q
    |||| ||||||| || | ||||||  |||||||| |||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||||    
T  4563807 tgagttgaagaagaaagtggaggaaaacacgagagctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaatca 4563709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 3171832 - 3171747
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaa 101  Q
    ||||||| ||||| |||||||| || |||  ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||    
T  3171832 tgaagaagaaggcagaggaggatacaagatttggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaa 3171747  T

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Target: chr6; HSP #13
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 4516412 - 4516339
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggag 89  Q
    ||||||| ||||| ||||||||||| ||||| ||||||||||||||  ||||||||||||||||||||||||||    
T  4516412 tgaagaagaaggcagaggaggacacaagaccaggtggttgttcatatgtgaacttggaaaaagtgattaaggag 4516339  T

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Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 4598254 - 4598189
Alignment:
Q  24 aaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggag 89  Q
    |||||||||||||| ||||||| ||| |||||||||||||||||||| || |||||||||||||||    
T  4598254 aaggcggaggaggaaacgagacttggaggttgttcatacatgaacttagagaaagtgattaaggag 4598189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 4490396 - 4490468
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaagga 88  Q
    ||||||| ||||| | ||||||||||||||  |||||| ||||||||||||||||||| ||||||||||||||    
T  4490396 tgaagaagaaggcagcggaggacacgagactcggtggtagttcatacatgaacttggacaaagtgattaagga 4490468  T

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Target: chr6; HSP #16
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 4505933 - 4505857
Alignment:
Q  31 aggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaat 107  Q
    ||||||| || ||||||||||||||||||| |||||||||||| ||||| ||||||||| | ||||||||| |||||    
T  4505933 aggaggatacaagacctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

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Target: chr6; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 24 - 107
Target Start/End: Complemental strand, 4493038 - 4492955
Alignment:
Q  24 aaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaat 107  Q
    ||||| |||||||||||   |||||||||||||||||||||||||||||| |||||||| |||||  | ||||||||| |||||    
T  4493038 aaggcagaggaggacacagtacctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 4568143 - 4568072
Alignment:
Q  17 gaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaagga 88  Q
    |||||| ||||| ||| ||||||| |||||||||| || |||||||||||||||||| ||||||||||||||    
T  4568143 gaagaagaaggcagagaaggacacaagacctggtgattcttcatacatgaacttggacaaagtgattaagga 4568072  T

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Target: chr6; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 4613754 - 4613825
Alignment:
Q  11 tgagatgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgat 82  Q
    |||| ||||||| ||||| ||||||||||||||||| || ||||||||||| ||||||||||| ||||||||    
T  4613754 tgagttgaagaagaaggcagaggaggacacgagaccaggaggttgttcatatatgaacttggacaaagtgat 4613825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 4617113 - 4617022
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaat 107  Q
    ||||||| ||||| |||||| |||| ||||| |||||||||||||||||||||||| | ||||| ||||||||  | ||||||||| |||||    
T  4617113 tgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 4392067 - 4392152
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaa 101  Q
    ||||||| |||||  ||||||||||  |||||||||||| ||||| |||||||||||| ||| ||||||||||| | |||||||||    
T  4392067 tgaagaagaaggcaaaggaggacacatgacctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaa 4392152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 4267215 - 4267280
Alignment:
Q  24 aaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggag 89  Q
    ||||| || ||| |||| ||||||||||||| |||||||||||||||||| ||||| |||||||||    
T  4267215 aaggcagaagagaacacaagacctggtggtttttcatacatgaacttggacaaagttattaaggag 4267280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 4299813 - 4299866
Alignment:
Q  48 ggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaa 101  Q
    ||||||||||| |||||||||||||| ||||| ||||||||| || ||||||||    
T  4299813 ggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaa 4299866  T

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Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 4601848 - 4601789
Alignment:
Q  48 ggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaat 107  Q
    |||||||||||||||| |||| |||| ||||| ||||||||| | ||||||||| |||||    
T  4601848 ggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat 4601789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 4622204 - 4622160
Alignment:
Q  45 cctggtggttgttcatacatgaacttggaaaaagtgattaaggag 89  Q
    |||||||||||||||||||  |||||||| ||||| |||||||||    
T  4622204 cctggtggttgttcatacaacaacttggacaaagttattaaggag 4622160  T

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Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 40 - 196
Target Start/End: Original strand, 16686332 - 16686488
Alignment:
Q  40 cgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatcacacctaagtg-ccgtttttatgcaatgtag 138  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||||| |  ||||||||||||| ||    
T  16686332 cgagacctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgactttttttatgcaatgcag 16686431  T
Q  139 tattatattgatccattgatcttctgctatcgaatttaagggatgatgctattgtagt 196  Q
    || |||||||||||||||||||||| | || ||||| ||||||| |||||||||||||    
T  16686432 tagtatattgatccattgatcttctccaattgaattcaagggat-atgctattgtagt 16686488  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 1674317 - 1674226
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaat 107  Q
    ||||||| ||||| |||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||  | ||||||||| |||||    
T  1674317 tgaagaagaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat 1674226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 20863879 - 20863987
Alignment:
Q  11 tgagatgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaatcac 110  Q
    |||| ||||||| ||||| ||||||||||| ||||| |  ||| ||||||| ||||||||||| ||||||||||||||| | ||||||||| |||||||     
T  20863879 tgagttgaagaagaaggcagaggaggacacaagaccggaaggtggttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaa 20863978  T
Q  111 acctaagtg 119  Q
    || ||||||    
T  20863979 acttaagtg 20863987  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 28000140 - 28000212
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaagga 88  Q
    ||||||||||||| |||||| |||| ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  28000140 tgaagaaaaaggcagaggagaacactagaccaggtggttgttcatacatgaacttggacaaagtgattaagga 28000212  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 24103088 - 24103017
Alignment:
Q  18 aagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggag 89  Q
    ||||| ||||| || ||| |||| ||| ||||||||| |||||||||||||||||| ||||| |||||||||    
T  24103088 aagaagaaggcagaagagaacacaagatctggtggtttttcatacatgaacttggacaaagttattaaggag 24103017  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 1281195 - 1281114
Alignment:
Q  26 ggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaataaaat 107  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||| || ||||||||||||||  | ||||||||| |||||    
T  1281195 ggcggaggagaacactagaccgggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaat 1281114  T

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Target: scaffold0288 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 3762 - 3845
Alignment:
Q  18 aagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaa 101  Q
    ||||| ||||| |||||| |||| ||||| |||||| |||||||||||||| |||| ||||| ||||||||| |||||||||||    
T  3762 aagaagaaggcagaggagaacactagaccaggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaa 3845  T

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Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4727 - 4800
Alignment:
Q  16 tgaagaaaaaggcggaggaggacacgagacctggtggttgttcatacatgaacttggaaaaagtgattaaggag 89  Q
    ||||||| ||||| |||||| |||| ||  ||||||| |||||||||||||||||||| |||||||||||||||    
T  4727 tgaagaagaaggcagaggagaacaccagttctggtggctgttcatacatgaacttggacaaagtgattaaggag 4800  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 101
Target Start/End: Complemental strand, 3086479 - 3086426
Alignment:
Q  48 ggtggttgttcatacatgaacttggaaaaagtgattaaggagtttttgcttaaa 101  Q
    |||||||||||||||||||||||||| ||||| ||||||||| | |||||||||    
T  3086479 ggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

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