View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_58 (Length: 212)
Name: NF8100_low_58
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 35345090 - 35345032
Alignment:
| Q |
139 |
gttcaaagtatttgaagaaaagaaaactaacatcaagaagctcctcaaccgtgtctctg |
197 |
Q |
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| T |
35345090 |
gttcaaagtatttgaagaaaagaaaactaacatcaagaagctcctcaaccgtgtctctg |
35345032 |
T |
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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 35345207 - 35345171
Alignment:
| Q |
24 |
ccctcttcaataaagggccaaccttgatttccttcat |
60 |
Q |
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| T |
35345207 |
ccctcttcaataaagggccaaccttgatttccttcat |
35345171 |
T |
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