View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_7 (Length: 507)
Name: NF8100_low_7
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 3886156 - 3886649
Alignment:
| Q |
1 |
taggttatccaacgatctcaaaaacccatcttcttcataacatctttaaggtaccaattacgactatcaaaggcttttggaaatatcaagcttaagcgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3886156 |
taggttatccaacgatctcaaaaacccatcttcttcataacatctttaaggtaccaattacgactatcaaaggcttttggaaatatcaagcttaagcgct |
3886255 |
T |
|
| Q |
101 |
actgcaccnnnnnnnn--acctttatgcttgcatttcaggagaaatgaaattcctgatcaaaggcctaagacgattagccaaaactttgaagatgatttt |
198 |
Q |
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| T |
3886256 |
actgcaccttttttttttacctttatgcttgcatttcaggagaaatgaaattcctgatcaaaggcctaagacgattagccaaaactttgaagatgatttt |
3886355 |
T |
|
| Q |
199 |
gtaaacgacattgcataaagaaatatggtgaaggtcttgatagtttccagatgatcacctttaggagtcaaaacaatgtgagtatcattgagatgggaag |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
3886356 |
gtaaacgacattgcataaagaaatatggtgaaggtcttgatagtttccagatgatcacctttaggagtcaaaacaatgtgagcatcgttgagatgggaag |
3886455 |
T |
|
| Q |
299 |
ggaaagcacctgaattcaactatgaggatgcggagtcgaacaattaatcctctcccagatcaccccgaaaatgctgattgaaactcgaatcaagaccgtc |
398 |
Q |
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| T |
3886456 |
ggaaagcacctgaattcaactatgaggatgcggagtcgaacaattaatcctctcctagatcaccccgaaaatgctgattgaaaatcgaattaagaccgtc |
3886555 |
T |
|
| Q |
399 |
gggacttagagacttgtcgtgatgtatacttaaaattgcctccttaaattcatcctttgataaaggtcttgtaagaagcatattatcatcattt |
492 |
Q |
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| T |
3886556 |
gggactcagagatttgtcgtgatgtatacttaaaattgcctccttaaattcatcctttgataaaggtcttgtaagaagcatattatcatcattt |
3886649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 409 - 491
Target Start/End: Original strand, 3899841 - 3899922
Alignment:
| Q |
409 |
gacttgtcgtgatgtatacttaaaattgcctccttaaattcatcctttgataaaggtcttgtaagaagcatattatcatcatt |
491 |
Q |
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||||||| | |||||||||| ||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||| |
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| T |
3899841 |
gacttgttgggatgtatactaaaaattgcctccttaaattcatccttttaaaaatgtcttg-aagaagcatattatcatcatt |
3899922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 236
Target Start/End: Complemental strand, 25897109 - 25897011
Alignment:
| Q |
138 |
gagaaatgaaattcctgatcaaaggcctaagacgattagccaaaactttgaagatgattttgtaaacgacattgcataaagaaatatggtgaaggtctt |
236 |
Q |
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|||| |||||||||| ||| |||||||| ||||||||||||||||||||| |||| |||||||| | ||||||||||||||| ||| || ||||||||| |
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| T |
25897109 |
gagagatgaaattcccgattaaaggcctgagacgattagccaaaactttggagatcattttgtagaggacattgcataaagagatagggcgaaggtctt |
25897011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 25897320 - 25897279
Alignment:
| Q |
1 |
taggttatccaacgatctcaaaaacccatcttcttcataaca |
42 |
Q |
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||||||||| ||||||| ||||| |||||||||||||||||| |
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| T |
25897320 |
taggttatcaaacgatcacaaaaccccatcttcttcataaca |
25897279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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