View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8100_low_8 (Length: 498)
Name: NF8100_low_8
Description: NF8100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8100_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 9 - 478
Target Start/End: Original strand, 5621723 - 5622192
Alignment:
| Q |
9 |
ggtagattatactatatgaactactatttctgcagagatattacagtaattagaaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactt |
108 |
Q |
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|||| ||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621723 |
ggtaaattgtactatatgaactactatttctgctgagatattacagtaattagcaaatgaaatttgaatatgtatttatgaaggattgtagtaaacactt |
5621822 |
T |
|
| Q |
109 |
tgagtctgttggtgttgctgttatattggtgtctattgcgatgttgttccttaaaaaagtattactaatctgctacttgccctggttttctcaaccatta |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5621823 |
tgagtctgttggcgttgctgttatattggtgtctattgcgatgttgttccttaaaagagtattgctaatctgctacttgccctggttttctcaaccatta |
5621922 |
T |
|
| Q |
209 |
agttgtaatagttattttttctgtagttgtcatactaacgacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatca |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5621923 |
agttgtaatagttattttttctgtagttgtcatactaacaacatctattatgctcataatatgccttacctgctgcatgcaaactaaaattgcttgatca |
5622022 |
T |
|
| Q |
309 |
gtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5622023 |
gtaactattgacaattgtttcctcgacattttttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatattgttttcgt |
5622122 |
T |
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| Q |
409 |
attttactggatgagagcaactcatttggtgtgcttggaagttctggaagagatctcactgaacactatg |
478 |
Q |
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| T |
5622123 |
attttactggatgagagcaactcatttggtgtgcttggaagttctggaagaggtctcactgaacactatg |
5622192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 340 - 476
Target Start/End: Complemental strand, 30634741 - 30634605
Alignment:
| Q |
340 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
439 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
30634741 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggtg |
30634642 |
T |
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| Q |
440 |
tgcttggaagttctggaagagatctcactgaacacta |
476 |
Q |
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| T |
30634641 |
tgcttggaagttctggaagaggtctcactgaacacta |
30634605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 340 - 478
Target Start/End: Complemental strand, 21423527 - 21423389
Alignment:
| Q |
340 |
tttcagaactctggccaaatagcacccttagatgagatcattaaattgaaggaaaaatatcgttttcgtattttactggatgagagcaactcatttggtg |
439 |
Q |
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|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
21423527 |
tttcagaattctggtcaaatagcacccttagatgatatcattaaattgaaggaaaaatatcggtttcgtattttactggatgagagcaactcatttggcg |
21423428 |
T |
|
| Q |
440 |
tgcttggaagttctggaagagatctcactgaacactatg |
478 |
Q |
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||||||||||||||||||||| ||||||||||||||||| |
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| T |
21423427 |
tgcttggaagttctggaagaggtctcactgaacactatg |
21423389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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