View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_high_5 (Length: 260)
Name: NF8101_high_5
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 103 - 247
Target Start/End: Complemental strand, 14707594 - 14707450
Alignment:
| Q |
103 |
agaaaagcaaaactgtaccgatttgacaaagcaggtaatcaatggaaggaacgaggggcaggaactgtgaagtttttgaagcataaggttactggaaaag |
202 |
Q |
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| T |
14707594 |
agaaaagcgaaactgtaccgatttgacaaggtagggaatcaatggaaggaacgaggggcaggaactgttaagtttttgaagcataaggttactggaaaag |
14707495 |
T |
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| Q |
203 |
ttaggcttgttatgagacaatcaaagactcttaagatctctgcta |
247 |
Q |
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| T |
14707494 |
ttaggcttgttatgagacaatcaaagactcttaagatctgtgcta |
14707450 |
T |
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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 230
Target Start/End: Original strand, 10995129 - 10995220
Alignment:
| Q |
139 |
aatcaatggaaggaacgaggggcaggaactgtgaagtttttgaagcataaggttactggaaaagttaggcttgttatgagacaatcaaagac |
230 |
Q |
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| T |
10995129 |
aatcagtggaaggagagaggtgctggtacggtgaagttcttgaagcataaggttactggtaaagtgaggcttctcatgaggcaatcgaagac |
10995220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 241
Target Start/End: Original strand, 44025218 - 44025320
Alignment:
| Q |
139 |
aatcaatggaaggaacgaggggcaggaactgtgaagtttttgaagcataaggttactggaaaagttaggcttgttatgagacaatcaaagactcttaaga |
238 |
Q |
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||||| |||||||| |||| || || || || ||||| |||||||||||||||||||| ||||| |||||| | ||||| ||||| ||||| || |||| |
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| T |
44025218 |
aatcagtggaaggagagaggtgctgggacggtcaagttcttgaagcataaggttactggtaaagtgaggcttctcatgaggcaatcgaagacactcaaga |
44025317 |
T |
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| Q |
239 |
tct |
241 |
Q |
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||| |
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| T |
44025318 |
tct |
44025320 |
T |
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