View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_high_9 (Length: 230)
Name: NF8101_high_9
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 215
Target Start/End: Original strand, 42557011 - 42557208
Alignment:
| Q |
18 |
ccttatggtgtcaaaaatacccatagatggtcccaaaccatgaaccgaagcacacccaatgtagtcctctactccaacctcttgttgcatcatgccgtcg |
117 |
Q |
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| T |
42557011 |
ccttatggtgtcaaaaatacccatagatggtcccaaaccatgaaccgaagcacaccccatgtagtcctctactccaacctcttgttgcatcatgccgtcg |
42557110 |
T |
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| Q |
118 |
tcgtcaaccaccgtgtcctcaaacaccgacattatggatgttcttaaggatgatgtcaaaccagggttctctatggccttggacataagaaagttcat |
215 |
Q |
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| T |
42557111 |
tcgtcaaccaccgtgtcctcaaacaccgacattatggatgttcttaaggatgatgtcaaaccagggttctctatggccttggacataagaaagttcat |
42557208 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 25996711 - 25996631
Alignment:
| Q |
19 |
cttatggtgtcaaaaatacccatagatggtcccaaaccatgaaccgaagcacacccaatgtagtcctctactccaacctct |
99 |
Q |
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|||||||| |||||||| | |||||||| |||| |||||||| |||||||| || || ||||||||||| ||||||||| |
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| T |
25996711 |
cttatggtatcaaaaatggcaatagatggacccaccccatgaacagaagcacatcccatatagtcctctacaccaacctct |
25996631 |
T |
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