View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_10 (Length: 326)
Name: NF8101_low_10
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 29285767 - 29286072
Alignment:
| Q |
1 |
aaaagagcgtgatagaaagtatgtctacaaatacaatccacatatcgttaccataattgaacaaattatttatcatatcacaagccaaatannnnnnnna |
100 |
Q |
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| T |
29285767 |
aaaagagcgtgatagaaagtatgtctacaaatacaatccacatatcgttaccataattgaacaaattatttatcatatcacaagccaaatatttttttta |
29285866 |
T |
|
| Q |
101 |
ttatgattaggaaacccataaataatcgtagctctccaagtgccaaaatttattaagataagaaacatagaaatcaatgagattatcattagatttcata |
200 |
Q |
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| T |
29285867 |
ttatgattaggaaacccataaataatcgtagctctccaagtgccaaaatttattaagataagaaacatagaaatcaatgagattatcattagatttcata |
29285966 |
T |
|
| Q |
201 |
atactcacatttacatcattattccacaagaagtagagcaatttacattgaaaaatgaactaaaacaacaagaaagacacttcgaaaatttggattaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285967 |
atactcacatttacatcattattccacaagaagtagagcaatttacattg-aaaatgaactaaaacaacaagaaagacacttcgaaaatttggattaatg |
29286065 |
T |
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| Q |
301 |
agtatcc |
307 |
Q |
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||||||| |
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| T |
29286066 |
agtatcc |
29286072 |
T |
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