View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_11 (Length: 292)
Name: NF8101_low_11
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_11 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 33310398 - 33310689
Alignment:
| Q |
1 |
aaaccacaccaactagcacaattctgtaaggctttcgggtgtgtagttcccttttataattttcctctgattggtgttcttctgcttcattcacttgctc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310398 |
aaaccacaccaactagcacaattctgtaaggctttcgggtgagtagttcccttttataattttcctctgattggtgttcttctgcttcattcacttgctc |
33310497 |
T |
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| Q |
101 |
ccaataattttcggttattgtcccatctttagcttctctatatcctgcccccattcgatacctatatttgtgaatatttcttgccatagctatagtttgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310498 |
ccaataattttcggttattgtcccatctttagcttctctatatcctggccccattcgatacctatatttgtgaatatttcttgccatagctatagtttgc |
33310597 |
T |
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| Q |
201 |
tctacaaaaggttcccatgataaggtaccatccatgaccacatctcgtcccttatttagagctgtcactagcagagatgatgcagcatcagt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33310598 |
tctacaaaaggttcccatgataaggtaccatccatgaccacatctcgtcccttatttagagctgtcactagcagagatgatgcagcatcagt |
33310689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 33250501 - 33250792
Alignment:
| Q |
1 |
aaaccacaccaactagcacaattctgtaaggctttcgggtgtgtagttcccttttataattttcctctgattggtgttcttctgcttcattcacttgctc |
100 |
Q |
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||||||||||||||||| ||||||||||||||||| | | ||||||||||| | || ||||||||||| ||| ||||||||| | |||||||||||||| |
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| T |
33250501 |
aaaccacaccaactagctcaattctgtaaggcttttgagagtgtagttcccctgtagaattttcctcttgttgatgttcttctccctcattcacttgctc |
33250600 |
T |
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| Q |
101 |
ccaataattttcggttattgtcccatctttagcttctctatatcctgcccccattcgatacctatatttgtgaatatttcttgccatagctatagtttgc |
200 |
Q |
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| T |
33250601 |
ccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgtgaacatttcttgccatagcaatagtctgc |
33250700 |
T |
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| Q |
201 |
tctacaaaaggttcccatgataaggtaccatccatgaccacatctcgtcccttatttagagctgtcactagcagagatgatgcagcatcagt |
292 |
Q |
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|| |||||||||||||||||||||||||| ||||| | ||||||||| || || |||||||| | |||||| |||||||||||||||||||| |
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| T |
33250701 |
tccacaaaaggttcccatgataaggtaccgtccataatcacatctcgccctttgtttagagccgccactagtagagatgatgcagcatcagt |
33250792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 33270673 - 33270964
Alignment:
| Q |
1 |
aaaccacaccaactagcacaattctgtaaggctttcgggtgtgtagttcccttttataattttcctctgattggtgttcttctgcttcattcacttgctc |
100 |
Q |
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||||||||||||||||| ||||||||||||||||| | | ||||||||||| | || ||||||||||| ||| ||||||||| | |||||||||||||| |
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| T |
33270673 |
aaaccacaccaactagctcaattctgtaaggcttttgagagtgtagttcccctgtagaattttcctcttgttgatgttcttctccctcattcacttgctc |
33270772 |
T |
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| Q |
101 |
ccaataattttcggttattgtcccatctttagcttctctatatcctgcccccattcgatacctatatttgtgaatatttcttgccatagctatagtttgc |
200 |
Q |
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||| |||||||| | ||||| ||||| |||| || |||||||| ||||||||| ||| ||| |||||||| ||||||||||||||| ||||| ||| |
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| T |
33270773 |
ccagtaattttcattaattgtaccatccgcagctactttatatcctacccccattctgtacttatgtttgtgaacatttcttgccatagcaatagtctgc |
33270872 |
T |
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| Q |
201 |
tctacaaaaggttcccatgataaggtaccatccatgaccacatctcgtcccttatttagagctgtcactagcagagatgatgcagcatcagt |
292 |
Q |
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|| |||||||||||||||||||||||||| ||||| | ||||||||| || || |||||||| | |||||| |||||||||||||||||||| |
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| T |
33270873 |
tccacaaaaggttcccatgataaggtaccgtccataatcacatctcgccctttgtttagagccgccactagtagagatgatgcagcatcagt |
33270964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 292
Target Start/End: Original strand, 33302486 - 33302703
Alignment:
| Q |
75 |
tgttcttctgcttcattcacttgctcccaataattttcggttattgtcccatctttagcttctctatatcctgcccccattcgatacctatatttgtgaa |
174 |
Q |
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||||||||||| ||||||||||||||||| |||||||| || ||||| ||||| | | || |||||| ||| | ||||||| || |||||||||||| |
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| T |
33302486 |
tgttcttctgcctcattcacttgctcccagtaattttcagtaattgtaccatcctcatctggtctataccctactcccattctgtatttatatttgtgaa |
33302585 |
T |
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| Q |
175 |
tatttcttgccatagctatagtttgctctacaaaaggttcccatgataaggtaccatccatgaccacatctcgtcccttatttagagctgtcactagcag |
274 |
Q |
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||||||||||||||| ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||| || || |||||||| ||||| || | |
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| T |
33302586 |
catttcttgccatagcaatagtctgctcgaaaaaaggttcccatgataaggtaccgtccatgatcacatctcgccctttgtttagagccgtcacaagtac |
33302685 |
T |
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| Q |
275 |
agatgatgcagcatcagt |
292 |
Q |
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||||||||| |||||||| |
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| T |
33302686 |
agatgatgccgcatcagt |
33302703 |
T |
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