View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_12 (Length: 290)
Name: NF8101_low_12
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 32844689 - 32844949
Alignment:
| Q |
14 |
atggacatcagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttat |
113 |
Q |
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| T |
32844689 |
atggacaacagatacacgacactaacaccgagacttatataccgataacagtttaagaaaatattaatgattatatgtaaccaaaaatgccgacacttat |
32844788 |
T |
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| Q |
114 |
atacacgacaatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctag |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32844789 |
atacacgacaatattagacactcgaacacgccttggatatagtgtcagtgcgctacatatgtgattatatctaaaactaaaaattaagcttaatttctag |
32844888 |
T |
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| Q |
214 |
gtgcctggaagcttgaaaagcatgattattggaagtttaacttaatttttaaagcataaat |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32844889 |
gtgcctggaagcttgaaaagcatgattattggaagtttaacttaattttgaaagcataaat |
32844949 |
T |
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