View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_2 (Length: 655)
Name: NF8101_low_2
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 132 - 636
Target Start/End: Original strand, 49372006 - 49372506
Alignment:
| Q |
132 |
cactcaaaataatttgatgttgtaatacttaacatacatttttatctttttctagcaaaccaaccaatttccagaagacaaaaccaattcttatctgtac |
231 |
Q |
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| T |
49372006 |
cactcaaaataagtt--tgatgtaaaacttaacatacatttttatctttttctagcaaaccaaccaatttccagaagacaaaaccaattcttatctgtac |
49372103 |
T |
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| Q |
232 |
atgaaaaagaataatctgtacagtaatactaacatgacaatgacaatgagccacagtatttgtggcagaataaaatcccttaacagagtgctgcatttac |
331 |
Q |
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| T |
49372104 |
atgaaaaagaataatctgtacagtaatactaacatgacaatgacaatgagccacagtatttgtggcagaataaaatcccttaacag--tgctgcatttac |
49372201 |
T |
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| Q |
332 |
aagagaataaaatcatcaacctggagactctgtccatgcgtgtctttgatgcggctttctgcaatggcctacaatccctttaaccttcttaaaactgctg |
431 |
Q |
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| T |
49372202 |
aagagaataaaatcatcaacctggagactctgtccatgcgtgtcttcgatgcggctttctgcaatggcctacaatccctttaaccttcttaaaactgctg |
49372301 |
T |
|
| Q |
432 |
gctatacccttggaaatcccaccttccaatctagcttttctcacaactgccatccgggcctctgagaacatccctcccaaatatccagttaacctgctgc |
531 |
Q |
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| T |
49372302 |
gctatacccttggaaatcccaccttccaatctagcttttctcacaactgccatccgggcctctgagaacatccctcccaaatatccagttaacctgctgc |
49372401 |
T |
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| Q |
532 |
ttactccaaggcgattttcttctgcattgcaatcctggatattcccactttctatgactatactatctaaaccaatgttgtcttcatcaccattttctgt |
631 |
Q |
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| T |
49372402 |
ttactccaaggcgattttcttctgcattgcaatcctggatattcccactttctatgactatactatctaaaccaatgttgtcttcatcaccattttctgt |
49372501 |
T |
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| Q |
632 |
cagta |
636 |
Q |
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||||| |
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| T |
49372502 |
cagta |
49372506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 49371888 - 49371972
Alignment:
| Q |
14 |
tggacatcaatgtaaaaccaatttacaccgagaatgcatgacatcttttctcttcttttcaaccgacgatgcatacaagttaaac |
98 |
Q |
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| T |
49371888 |
tggacgtcaatgtaaaaccaatttacaccgacaatgcatgacatcttttctcttcttttcaaccgatgatgcatacaagttaaac |
49371972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Complemental strand, 52090257 - 52090212
Alignment:
| Q |
218 |
attcttatctgtacatgaaaaagaataatctgtacagtaatactaa |
263 |
Q |
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| T |
52090257 |
attcttatctgtgaatgaaaaagaataaactgtacagtaatactaa |
52090212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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