View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_23 (Length: 239)
Name: NF8101_low_23
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 9223144 - 9222913
Alignment:
| Q |
1 |
tgggagaagataatgatcaagccctagatgcagttatgaaactttattctgccttcaaaaataaaaacatacaagaattgtctgagatacttgcagatga |
100 |
Q |
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| T |
9223144 |
tgggagaagataatgatcaagccctagatgcagttatgaaactttattctgccttcaaaaataaaaacatacaagaattgtctgagatacttgcagatga |
9223045 |
T |
|
| Q |
101 |
atgtagatgtgtgtgcaatttcctctcattcttccaagctttccaaggaaaaacggtatctgctcctattttcagctcattcaacaacaataattgtctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9223044 |
atgtagatgtgtgtgcaatttcctctcattcttccaagctttccaaggaaaaacggtatctgctcctattttcagctcattca---acaataattgtctt |
9222948 |
T |
|
| Q |
201 |
gtttttagctttctacaacaatatttttgcattct |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
9222947 |
gtttttagctttctacaacaatatttttgcattct |
9222913 |
T |
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