View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8101_low_29 (Length: 218)
Name: NF8101_low_29
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_29 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 8062248 - 8062430
Alignment:
| Q |
20 |
caattcttctcctttctttcacatcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8062248 |
caattcttctcctttctttcacatcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaatg |
8062347 |
T |
|
| Q |
120 |
tctggtaacaattcatcttcaactgtttttgggtcatcaagtatggccaaatcgaggttggtttgttattgtggtgttgaatc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8062348 |
tctggtaacaattcatcttcaactgtttttgggtcatcaagtatggccaaatcgaggttggtttgttattgtggtgttgaatc |
8062430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 1394520 - 1394338
Alignment:
| Q |
20 |
caattcttctcctttctttcacatcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1394520 |
caattcttctcctttctttcacatcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaatg |
1394421 |
T |
|
| Q |
120 |
tctggtaacaattcatcttcaactgtttttgggtcatcaagtatggccaaatcgaggttggtttgttattgtggtgttgaatc |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1394420 |
tctggtaacaattcatcttcaactgtttttgggtcatcaagtatggccaaatcgaggttggtttgttattgtggtgttgaatc |
1394338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 28847708 - 28847888
Alignment:
| Q |
22 |
attcttctcctttctttcacatcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaatgtc |
121 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||| |||| | | |||||||||||||| ||||||||||| || | |
|
|
| T |
28847708 |
attcttctcctttcttccacatcgattcttcctctacatcctttcttccttccacatcgatttctgtcttgtgtttgcagatcggaaaacagaaagtggc |
28847807 |
T |
|
| Q |
122 |
tggtaacaattcatcttcaactgtttttgggtcatcaagtatggccaaatcgaggttggtttgttattgtggtgttgaatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
28847808 |
tggtaacaattcatcttcaactgtttctgggtcatcaagtatggcgaaatcgaggttggtttgttattgtggtgttgaatc |
28847888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 48053567 - 48053747
Alignment:
| Q |
22 |
attcttctcctttctttcacatcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaatgtc |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
48053567 |
attcttctcctttcttccacatcgattcttcctctacctcctttcttagttccacatcgatttgttttgtgtgtttgcagatcggaaaacagaaaatggt |
48053666 |
T |
|
| Q |
122 |
tggtaacaattcatcttcaactgtttttgggtcatcaagtatggccaaatcgaggttggtttgttattgtggtgttgaatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48053667 |
tggtaacaattcatcttcaactgtttctgggtcatcaagtatggccaaatcaaggttggtttgttattgtggtgttgaatc |
48053747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 38613093 - 38612997
Alignment:
| Q |
22 |
attcttctcctttctttcacatcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaat |
118 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38613093 |
attcttctcctttcttccacatcgattcttccactacctcctttcttagtttcacatcgatttgttttgtgtgtttgcagatcggaaaacagaaaat |
38612997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 113
Target Start/End: Complemental strand, 38612994 - 38612962
Alignment:
| Q |
81 |
atttgttttgtgtgtttgcagatctgaaaacag |
113 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
38612994 |
atttgttttgtgtgtttgcagatcggaaaacag |
38612962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 154
Target Start/End: Complemental strand, 12182448 - 12182340
Alignment:
| Q |
42 |
atcgattcttcctctacctcctttcttagttccacatcaatttgttttgtgtgtttgcagatctgaaaacagaaaatgtctggtaacaattcatcttcaa |
141 |
Q |
| |
|
||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||| |||||| |||||| | ||||| |||||||||||| |
|
|
| T |
12182448 |
atcgattcttcctctacatcctttctt----ccaggtcgatttgttttgtgtgtttgcagatcggaaaacgaaaaatggcatgtaaccattcatcttcaa |
12182353 |
T |
|
| Q |
142 |
ctgtttttgggtc |
154 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
12182352 |
ctgtttctgggtc |
12182340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University