View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_5 (Length: 443)
Name: NF8101_low_5
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 25439017 - 25439398
Alignment:
| Q |
17 |
cttttcacaacaaaattgaaccgatgtatctaaagagagattcgtgtgttaattttgtgcatccaatttaaatgcactaagctgtaaattattgtcatat |
116 |
Q |
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| T |
25439017 |
cttttcacaacaaaattgaaccgatgtatctaaagagagattcgtgtgttaattttgtgcatccaatttaaatgcactaagctgtaaattattgtcatat |
25439116 |
T |
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| Q |
117 |
ttattgataatatgcattataggagaaattctaatatgcaccacattcatgagtggtttatcgtggaatagtacttgaacaatgtttaaaacttcaaaca |
216 |
Q |
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| T |
25439117 |
ttattgataatatgcattataggagaaattctaatatgcaccacattcatgagtggtttatcgtggaatagtacttgaacaatgtttaaaacttcaaaca |
25439216 |
T |
|
| Q |
217 |
tcacacactgtcatctcttgatagtagatgttagtgacttaattgataccggtttgattaagacaacaaaaaacatgttgctcatatttaaccgacttca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25439217 |
tcacacactgtcatctcttgatagtagatgttagtgacttaattgataccggtttgattaagacaacaaaaaacatgttgctcatatttaaccgacttca |
25439316 |
T |
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| Q |
317 |
atcaagtttaaccgtaaatatgaaaaataaaaagactccaagagtctgatgtggttgtgtctcctcctgctctatctctacc |
398 |
Q |
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| T |
25439317 |
atcaagtttaaccgtaaatatgaaaaataaaaagactccaagagtctgatgtggttgtgtctcctcctgctctatctctacc |
25439398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 440
Target Start/End: Original strand, 25445383 - 25445429
Alignment:
| Q |
394 |
ctacccaatgcacttcttgatgtggcacaaatggttcttctcactcg |
440 |
Q |
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| T |
25445383 |
ctacccaatgcacttcttgatgtggcacaaatggttcctctctctcg |
25445429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 17 - 440
Target Start/End: Complemental strand, 26527416 - 26526992
Alignment:
| Q |
17 |
cttttcacaacaaaattgaaccgatgtatctaaagagagattcgtgtgttaattttgtgcatccaatttaaatgcactaagctgtaaattattgtcata- |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
26527416 |
cttttcacaacaaaattgaaccgatgtatctaaagagagattcgtgtgttaattttgtgcatcaaatttaaatgcactgagctgtaaattattgtcattg |
26527317 |
T |
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| Q |
116 |
tttattgataatatgcattataggagaaattctaatatgcaccacattcatgagtggtttatcgtggaatagtacttgaacaatgtttaaaacttcaaac |
215 |
Q |
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| T |
26527316 |
tttactgataatatgcattataggagaaattctaatatgcaccacattcatgaatggtttatcgtggaatagtacttgaacaatgtttaaaacttcaaac |
26527217 |
T |
|
| Q |
216 |
atcacacactgtcatctcttgatagtagatgttagtgacttaattgataccggtttgattaagacaacaaaaaacatgttgctcatatttaaccgacttc |
315 |
Q |
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| T |
26527216 |
atcacacac-gtcatctcttgatagtagatgttagtgacttaattgataccggtttgattaagacaacaaaaaatatgttgctcatattgaaccgacttc |
26527118 |
T |
|
| Q |
316 |
aatcaag-------tttaaccgtaaatatgaaaaataaaaagactccaagagtctgatgtggttgtgtctcctcctgctctatctctacccaatgcactt |
408 |
Q |
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||| ||| |||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||| |||||| ||||| ||||||||| |
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| T |
26527117 |
aattaagtccctattttaaccgtaaatatgaaaaat--aaagactcc-agagcctgatgtggttgtgt---ctcctgatctatccctacctaatgcactt |
26527024 |
T |
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| Q |
409 |
cttgatgtggcacaaatggttcttctcactcg |
440 |
Q |
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|||||||||||||||||||||| |||| |||| |
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| T |
26527023 |
cttgatgtggcacaaatggttcgtctctctcg |
26526992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 213
Target Start/End: Original strand, 4600191 - 4600265
Alignment:
| Q |
139 |
gagaaattctaatatgcaccacattcatgagtggtttatcgtggaatagtacttgaacaatgtttaaaacttcaa |
213 |
Q |
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|||||||||||| ||| | ||| ||||| ||||||||| |||| | ||||||| || ||||||||||||||||| |
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| T |
4600191 |
gagaaattctaacatgtatcaccttcataagtggtttaccgtgaacaagtacttaaaaaatgtttaaaacttcaa |
4600265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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