View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_6 (Length: 428)
Name: NF8101_low_6
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 11659137 - 11659284
Alignment:
| Q |
20 |
catgtagaaccattgccgtcgattcctcctccgcctgtgccatcaattgtgagaccgtttacatgttggatcttaatccaatgttcatcatctttcaatg |
119 |
Q |
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| T |
11659137 |
catgtagaaccattgccgtcgattcctcctccgcctgtgccatcaattgtgacaccgtttacatattggatcttaatccaatgttcatcatctttcaatg |
11659236 |
T |
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| Q |
120 |
cttccttagaaggtgcaacgattttcccttgaagctacaatatgcatg |
167 |
Q |
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| T |
11659237 |
cttccttagaaggtgcaacgactttcccttgaagctacaataagcatg |
11659284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 2523983 - 2523906
Alignment:
| Q |
20 |
catgtagaaccattgccgtcgattcctcctccgcctgtgccatcaattgtgagaccgtttacatgttggatcttaatccaa |
100 |
Q |
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| T |
2523983 |
catgtagaaccatagccgtcaattcctcctcc---tgtgccatcaattgtgagaccatttacatattggatcctaatccaa |
2523906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 32923386 - 32923250
Alignment:
| Q |
23 |
gtagaaccattgccgtcgattcctcctccgcctgtgccatcaattgtgagaccgtttacatgttggatcttaatccaatgttcatcatctttcaatgctt |
122 |
Q |
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| T |
32923386 |
gtagaaccatggccgttaattcttcctctgcgtgtgccatcaattgtgagaccatttacatattggatc-taatccaatatgaggcatccttaaatgctt |
32923288 |
T |
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| Q |
123 |
ccttagaaggtgcaacgattttcccttgaagctacaat |
160 |
Q |
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| T |
32923287 |
tcttaggaggggcaactatttttcctttaagctgcaat |
32923250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 11155765 - 11155815
Alignment:
| Q |
245 |
aaaaatgagtagtgatatatgtgaaactatttgtgataactttgatgacaa |
295 |
Q |
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| T |
11155765 |
aaaaaagagtagtgatatatgtagaaccatttgtgacaactttgatgacaa |
11155815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 2540849 - 2540813
Alignment:
| Q |
123 |
ccttagaaggtgcaacgattttcccttgaagctacaa |
159 |
Q |
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| T |
2540849 |
ccttagaaggtgcaactattttcccttcaagctacaa |
2540813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 11789953 - 11789909
Alignment:
| Q |
251 |
gagtagtgatatatgtgaaactatttgtgataactttgatgacaa |
295 |
Q |
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| T |
11789953 |
gagtagtgatatttgtacaactatttgtgatatctttgatgacaa |
11789909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 295
Target Start/End: Original strand, 39840593 - 39840636
Alignment:
| Q |
252 |
agtagtgatatatgtgaaactatttgtgataactttgatgacaa |
295 |
Q |
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| T |
39840593 |
agtagtgatatatgtacaactatttgtgataactttgatgacaa |
39840636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Original strand, 34952294 - 34952338
Alignment:
| Q |
251 |
gagtagtgatatatgtgaaactatttgtgataactttgatgacaa |
295 |
Q |
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| T |
34952294 |
gagtagtgatatatgtacaattatttgggataactttgatgacaa |
34952338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 47644897 - 47644847
Alignment:
| Q |
245 |
aaaaatgagtagtgatatatgtgaaactatttgtgataactttgatgacaa |
295 |
Q |
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|||||||||||||||||||||| || |||||| |||||||||||||||| |
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| T |
47644897 |
aaaaatgagtagtgatatatgtacaattatttggtataactttgatgacaa |
47644847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 45274458 - 45274401
Alignment:
| Q |
238 |
tccatataaaaatgagtagtgatatatgtgaaactatttgtgataactttgatgacaa |
295 |
Q |
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| T |
45274458 |
tccatatagaaacgagtggtgatatatgtacaactatttgggacaactttgatgacaa |
45274401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 251 - 295
Target Start/End: Complemental strand, 30622206 - 30622162
Alignment:
| Q |
251 |
gagtagtgatatatgtgaaactatttgtgataactttgatgacaa |
295 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||| |
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| T |
30622206 |
gagtagtgatatatgtacaactatttgggacaactttgatgacaa |
30622162 |
T |
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