View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8101_low_8 (Length: 378)
Name: NF8101_low_8
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 2489256 - 2488891
Alignment:
| Q |
1 |
acatgatta-tatatttgttctatattagaaatatttccttttcannnnnnnnagattcatttgaaatattttctagtggtatcgaaaacgtccaagttt |
99 |
Q |
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| T |
2489256 |
acatgattaatatatttgttctatattagaaatatttccttttcatttttcttagattcatttgaaatattttctagtggtatcgaaaacgtccaagttt |
2489157 |
T |
|
| Q |
100 |
ctacatcattgccttaannnnnnnnnattacatagagggtctaagctcggaaaaagaaataataacataagagatataaattctcattacatcaaccgct |
199 |
Q |
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| T |
2489156 |
ctacatgattgccttaatttttttttattacatagagggcctaggttcggaaaaagaaacaataatataagggatataaactctcattacatcaaccgct |
2489057 |
T |
|
| Q |
200 |
atcaaatgatcaaactaagttggacaagactcataataaacaatatcagaactcaacgagtggacaaaattagctaatgcatttgcatattgattagttt |
299 |
Q |
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| T |
2489056 |
atcaaatgatcaaactaagttggacaaaactcataataaacaatataagaacccaacgagtggacaaaattagctaatgcgtttgcatattgattggttt |
2488957 |
T |
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| Q |
300 |
cacggtatgagtgacgaaccacaacttcccactccaactcaagcaagcgacaaatcttcaccatct |
365 |
Q |
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| T |
2488956 |
cacggtatgagtgacgaatcacaacctcccactccaactcaagcaagcgacaaatcttcaccatct |
2488891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 12622639 - 12622698
Alignment:
| Q |
288 |
attgattagtttcacggtatgagtgacgaaccacaacttcccactccaactcaagcaagc |
347 |
Q |
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| T |
12622639 |
attgattagcttcacggtatgaatgatgaaccacaacctcccactccaattcaagcaagc |
12622698 |
T |
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