View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8101_low_9 (Length: 348)
Name: NF8101_low_9
Description: NF8101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8101_low_9 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 4266525 - 4266218
Alignment:
| Q |
19 |
catcaagtaaccatgaagaccaattttcagcttcattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtcc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4266525 |
catcaagtaaccatgaagaccaattttcagctccattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtcc |
4266426 |
T |
|
| Q |
119 |
atcttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4266425 |
atcttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacga |
4266326 |
T |
|
| Q |
219 |
caatcaatattcaaaaccatcatagaatttttgttatcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgaca |
318 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4266325 |
caatcaatattcaaaaccatcatagcatttttgttctcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgaca |
4266226 |
T |
|
| Q |
319 |
ggtgaaga |
326 |
Q |
| |
|
|||||||| |
|
|
| T |
4266225 |
ggtgaaga |
4266218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 4289200 - 4289505
Alignment:
| Q |
21 |
tcaagtaaccatgaagaccaattttcagcttcattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccat |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4289200 |
tcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcactcaacacttcaacagccacaattagtccat |
4289299 |
T |
|
| Q |
121 |
cttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgaca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4289300 |
cttcccccaataactcatttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgaca |
4289399 |
T |
|
| Q |
221 |
atcaatattcaaaaccatcatagaatttttgttatcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgacagg |
320 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4289400 |
atcaatattcaaaaccatcatagcatttttgttctcaatttcttctgctttcactctgcatacccatgcataagctatagatacaacaaaagttgacagg |
4289499 |
T |
|
| Q |
321 |
tgaaga |
326 |
Q |
| |
|
|||||| |
|
|
| T |
4289500 |
tgaaga |
4289505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 21 - 261
Target Start/End: Original strand, 4297795 - 4298035
Alignment:
| Q |
21 |
tcaagtaaccatgaagaccaattttcagcttcattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccat |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
4297795 |
tcaagtaacaatgaagaccaattttcagctccagtcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacaactacaattagtccat |
4297894 |
T |
|
| Q |
121 |
cttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgaca |
220 |
Q |
| |
|
||| || ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||| |
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|
| T |
4297895 |
tttctccaaataactcacttgttttaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggaattggctgatctaaacgagtccgaca |
4297994 |
T |
|
| Q |
221 |
atcaatattcaaaaccatcatagaatttttgttatcaattt |
261 |
Q |
| |
|
||| ||||||||| |||||| | ||||||||| ||||||| |
|
|
| T |
4297995 |
atcgatattcaaacccatcacaacatttttgttctcaattt |
4298035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 4284502 - 4284805
Alignment:
| Q |
22 |
caagtaaccatgaagaccaattttcagcttcattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccatc |
121 |
Q |
| |
|
|||||||| ||||| || |||||||||| |||| |||||| ||||||||||||||||||||||||||| | ||||||||| ||||| ||||| ||||| |
|
|
| T |
4284502 |
caagtaacgatgaacacatattttcagctccatttaacactacatcttttaaagtttccaaagcttcacctagcacttcaaccgccacgattagcccatc |
4284601 |
T |
|
| Q |
122 |
ttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgacaa |
221 |
Q |
| |
|
|| ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||||||| ||| |||||| |
|
|
| T |
4284602 |
tttccccaataactcacttgtttcaacaattgcaagtcttcctccaatacaatttccaaaatatgttgcaggagtcggtggttctaaacaattccgacaa |
4284701 |
T |
|
| Q |
222 |
tcaatattcaaaaccatcatagaatttttgttatcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgacaggt |
321 |
Q |
| |
|
|||||||||||| |||||| || ||||||||| |||||||||| | ||||| |||| ||||||| ||||||||||| ||||||||||||||||||| || |
|
|
| T |
4284702 |
tcaatattcaaagccatcagagcatttttgttctcaatttctttagctttcattctgtatacccaggcataagctatggatacaacaaaagttgacaagt |
4284801 |
T |
|
| Q |
322 |
gaag |
325 |
Q |
| |
|
|||| |
|
|
| T |
4284802 |
gaag |
4284805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 21 - 326
Target Start/End: Complemental strand, 4260977 - 4260672
Alignment:
| Q |
21 |
tcaagtaaccatgaagaccaattttcagcttcattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccat |
120 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||| ||||| |
|
|
| T |
4260977 |
tcaagtaacaatgaagaccaattttcagctccattcaacactccatcttttatagtttccaaagcttcacttaacatttcaacagccacaattaatccat |
4260878 |
T |
|
| Q |
121 |
cttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgattacgaca |
220 |
Q |
| |
|
||| || ||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| | ||||||||||| | || |
|
|
| T |
4260877 |
tttctccaaataactcacttgttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcgttggttctaaacgattcctgca |
4260778 |
T |
|
| Q |
221 |
atcaatattcaaaaccatcatagaatttttgttatcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgacagg |
320 |
Q |
| |
|
||| ||||||||| |||||| | ||||||||| ||||||| |||| ||||| ||| |||||| |||||||||| |||||||| ||||| ||||||| | |
|
|
| T |
4260777 |
atcgatattcaaacccatcacaacatttttgttctcaattttctctgctttcattctacataccaatgcataagcaatagataccacaaatgttgacaag |
4260678 |
T |
|
| Q |
321 |
tgaaga |
326 |
Q |
| |
|
|||||| |
|
|
| T |
4260677 |
tgaaga |
4260672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 318
Target Start/End: Original strand, 4255496 - 4255793
Alignment:
| Q |
21 |
tcaagtaaccatgaagaccaattttcagcttcattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccat |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||||||| ||||| |||||||||| |
|
|
| T |
4255496 |
tcaagtaaccatgaagaccaattttcagctccattcaacactacatcttttaatgtttccaaagtttcactcaacacttcaacggccaccattagtccat |
4255595 |
T |
|
| Q |
121 |
cttcccccaataactcatttgttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgat-ctaaacgattacgac |
219 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||||||||||||||||| | || || | |||||||||| | | |
|
|
| T |
4255596 |
cttcccccaataactcacctgttttaacaatttcaagtcatgttccaatacaatttccaaaatatgttgcaggagtagg-tgctcctaaacgattcctgc |
4255694 |
T |
|
| Q |
220 |
aatcaatattcaaaaccatcatagaatttttgttatcaatttcttctgttttcactctgcatacccatgcataagctatagatacaacaaaagttgaca |
318 |
Q |
| |
|
|||| ||||| ||| |||||| || ||| ||||| ||||||| || | ||||| ||| |||||| |||||||||| |||||| | ||||| ||||||| |
|
|
| T |
4255695 |
aatcgatatttaaacccatcaaagcattcttgttctcaattttctcggctttcattctacataccaatgcataagcaatagatgccacaaatgttgaca |
4255793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 4257781 - 4257953
Alignment:
| Q |
42 |
ttttcagcttcattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacagccacaattagtccatcttcccccaataactcatttg |
141 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| || ||||||||||||| |
|
|
| T |
4257781 |
ttttcagctccattcaacactccatcttttaaagtttccaaagcttcactcaacacttcaacaaccacaattagtccattttctccaaataactcatttg |
4257880 |
T |
|
| Q |
142 |
ttttaacaattgcaagttttcctccaatacaatttccaaaatatgttgcaggaatcggctgatctaaacgatt |
214 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||||||||||||| |||| || ||||||||||| |
|
|
| T |
4257881 |
ttttaacaattgcaagtcttgctccaatacaatttccaaaatatgttgcaggagtcggttgttctaaacgatt |
4257953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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