View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_high_12 (Length: 377)
Name: NF8102_high_12
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 51871754 - 51871392
Alignment:
| Q |
1 |
gagatgggagacattagagagataattacgtgcgtcaattacaaccatttaattaatcatgggaaaaagggtatgagattgtgatgattctgtctgtgta |
100 |
Q |
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| T |
51871754 |
gagatgggagacattagagagataattacgtgcgtcaattacaaccatttaattaatcatgtgaaaaagggtatgagattgtgatgattctgtctgtgta |
51871655 |
T |
|
| Q |
101 |
taggagtgcacggtgttattgattgtatatgaggaaacatacactagaatagattaactctcattttcacttgcacggtgaggaccagtaatcaattttg |
200 |
Q |
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| T |
51871654 |
taggagtgcacggtgttattgattgtatatgaggaaacatacactagaatagattaactctcattttcacttgcacggtgaggaccagtaatcaattttg |
51871555 |
T |
|
| Q |
201 |
tttcattgtacattatacgataaattaattaaaattgcctgaaacacatggccaccccatgtcagattccattggtttgtagctcatccagttgatgtca |
300 |
Q |
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| T |
51871554 |
tttcattgtacattatacgataaattaattaaaattgcctgaaacacatggccaccccatgtcagattccattggtttgtagctcatccagttgatgtca |
51871455 |
T |
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| Q |
301 |
atgaaagatatgtatcattgcaagggaacccaatgctctgaaaataaagcaacagaagaagtt |
363 |
Q |
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| T |
51871454 |
atgaaagatatgtatcattgcaagggaacccaatgctctgaaaataaagcaacagaagaagtt |
51871392 |
T |
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