View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_high_18 (Length: 255)
Name: NF8102_high_18
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 14075019 - 14075243
Alignment:
| Q |
16 |
aagaatacatagtgaaacaactgggtttggagaatggtggtcaatctattgaaatgggaataattcatattggggactttatgggaagattttgttctaa |
115 |
Q |
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| T |
14075019 |
aagaatacatagtgaaacaactgggtttagagaatggtggtcaatctattgaaatgggaataattcatattggggactttatgggacgattttgttctaa |
14075118 |
T |
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| Q |
116 |
tcttggtatgaatcatcaagctgttaaagctgctacggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaaca |
215 |
Q |
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| T |
14075119 |
tcttggtatgaatcatcaagctgttaaagctgctacggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaaca |
14075218 |
T |
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| Q |
216 |
gttatatacatcataactcatcttt |
240 |
Q |
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| T |
14075219 |
gttatatacatcataactcatcttt |
14075243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 14150433 - 14150654
Alignment:
| Q |
19 |
aatacatagtgaaacaactgggtttggagaatggtggtcaatctattgaaatgggaataattcatattggggactttatgggaagattttgttctaatct |
118 |
Q |
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| T |
14150433 |
aatacatcatgaaacaactagctttggagaatggtggtcaatctgtagaaatgggaacaactcatattggggactttatgggacgattttgttcgaatct |
14150532 |
T |
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| Q |
119 |
tggtatgaatcatcaagctgttaaagctgctacggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagtt |
218 |
Q |
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| T |
14150533 |
tggtatgaatcatcaagctgttaaagctgctaatgaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagtt |
14150632 |
T |
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| Q |
219 |
atatacatcataactcatcttt |
240 |
Q |
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| T |
14150633 |
atatacatcataactcagcttt |
14150654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 13609962 - 13610186
Alignment:
| Q |
16 |
aagaatacatagtgaaacaactgggtttggagaatggtggtcaatctattgaaatgggaataattcatattggggactttatgggaagattttgttctaa |
115 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||||||| ||||||||||||| || ||||||||||||| |
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| T |
13609962 |
aagaatacatagtgaaacaacttggtttggagaatggtggtcaatctgtagaaatgggaacaattcatgctggggactttatgagacgattttgttctaa |
13610061 |
T |
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| Q |
116 |
tcttggtatgaatcatcaagctgttaaagctgctacggaatctgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaaca |
215 |
Q |
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| T |
13610062 |
tcttggtatgaatcatcaagctgttaaagctgctcaggaatctgttaagaaatcagaggaatttgatataaggagaagtcccataacaattgctgcagca |
13610161 |
T |
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| Q |
216 |
gttatatacatcataactcatcttt |
240 |
Q |
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| T |
13610162 |
gttatatacatcattactcagcttt |
13610186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 188
Target Start/End: Complemental strand, 36012298 - 36012213
Alignment:
| Q |
103 |
gattttgttctaatcttggtatgaatcatcaagctgttaaagctgctacggaatctgttcagaattcagaagaatttgatataagg |
188 |
Q |
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| T |
36012298 |
gattttgttctaatcttggtatgaatcatcaagctgttaaagctgctcaggaatctgttcagaaatccgaagaatttgatataagg |
36012213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 36012509 - 36012426
Alignment:
| Q |
16 |
aagaatacatagtgaaacaactgggtttggagaatggtggtcaatctattgaaatgggaataattcatattggggactttatgg |
99 |
Q |
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| T |
36012509 |
aagaatacatagtgaaacaactgggtttggagaatggcggtcaatctgttgaaatgggaacaattcatgctggggactttatgg |
36012426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 36011363 - 36011314
Alignment:
| Q |
186 |
aggagaagtcccatatcaattgctgcaacagttatatacatcataactca |
235 |
Q |
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| T |
36011363 |
aggagaagtcccatatcaattgctgcagcagttatatacatcattactca |
36011314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 158 - 229
Target Start/End: Original strand, 7591666 - 7591737
Alignment:
| Q |
158 |
tgttcagaattcagaagaatttgatataaggagaagtcccatatcaattgctgcaacagttatatacatcat |
229 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
7591666 |
tgttgagaaatcagaagaatttgatataaggagaagtcccatatcaaatgctgcagcagttatatacatcat |
7591737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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