View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_high_3 (Length: 545)
Name: NF8102_high_3
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 525
Target Start/End: Original strand, 28081109 - 28081615
Alignment:
| Q |
19 |
aagaaccattgaatcatgtagaagcagagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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| T |
28081109 |
aagaaccattgaatcatgtagaagcagagagacaaagaagagaaaagcttaaccaaaaattctatgctctacgtgctgtggttccaaatgtttctaagat |
28081208 |
T |
|
| Q |
119 |
ggacaaagcatcgctcctaggcgatgctatttcttatataaatgaattgaaatcgaagctacaagggctggaatcgtcgaaaggcgaattggagatacaa |
218 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
28081209 |
ggacaaagcatcgctgctaggcgatgctatatcttatataaacgaattgaaatcgaagctacaagggctggaatcgtcaaaaggtgaattggagaaacaa |
28081308 |
T |
|
| Q |
219 |
ttaggtgcaacaaagaaggaattagaacttgttgcaagcaaaaatcaaagtcaaaatccaattccattagataaagaaatggagaaaacaacgagctcaa |
318 |
Q |
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| T |
28081309 |
ttaggtgcaacaaagaaggaattagaacttgttgcaagcaaaaatcaaagtcaaaatccaattccattagataaagaaaaggagaaaacaacaagctcaa |
28081408 |
T |
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| Q |
319 |
caagcccttctaagttaattgacttggatattgatgtgaagattatgggttgggatgctatgattaggattcaatgtagcaagaagaatcaccctgcggc |
418 |
Q |
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| T |
28081409 |
caagctcttctaagttaattgacttggatattgatgtgaagattatgggttgggatgctatgattaggattcaatgcagcaagaagaatcaccctgcggc |
28081508 |
T |
|
| Q |
419 |
gaagttgatggcggcgttgaaagaattagaccttgatgtgaatcatgccagtgtgtctgttgtgaatgatttgatgattcaacaagcttctgttaacatg |
518 |
Q |
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| T |
28081509 |
gaagttgatggcggcgttgaaagaattagaccttgatgtgaatcatgctagtgtgtctgttgtgaatgatttgatgattcaacaagcttctgttaacatg |
28081608 |
T |
|
| Q |
519 |
ggaagta |
525 |
Q |
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||||||| |
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| T |
28081609 |
ggaagta |
28081615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 9194779 - 9194878
Alignment:
| Q |
28 |
tgaatcatgtagaagcagagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaatggacaaagc |
127 |
Q |
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|||| ||||| ||||||||||||||||| ||||| || || ||||| | |||||||||| || | ||||||||||||| ||||| || ||||| ||||| |
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| T |
9194779 |
tgaaccatgtggaagcagagagacaaaggagagagaaactaaaccatagattctatgctttaagatctgtggttccaaacgtttcaaagatggataaagc |
9194878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 9213256 - 9213152
Alignment:
| Q |
23 |
accattgaatcatgtagaagcagagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaatggac |
122 |
Q |
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|||| |||| ||||| ||||||||||||||||| ||||| || || ||||| | ||| || ||| || | ||||||||||||||||||| || ||||| |
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| T |
9213256 |
accaatgaaccatgtggaagcagagagacaaaggagagagaaactaaaccatagattttacgctttaagatctgtggttccaaatgtttcaaagatggat |
9213157 |
T |
|
| Q |
123 |
aaagc |
127 |
Q |
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||||| |
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| T |
9213156 |
aaagc |
9213152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 345 - 505
Target Start/End: Original strand, 12886221 - 12886381
Alignment:
| Q |
345 |
gatattgatgtgaagattatgggttgggatgctatgattaggattcaatgtagcaagaagaatcaccctgcggcgaagttgatggcggcgttgaaagaat |
444 |
Q |
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| T |
12886221 |
gatatcgacgtgaagattataggttgggatgcaatgataagggtccaatgcagtaagaaaaaccaccctgcagcgaggttaatggcagcgttaatggagc |
12886320 |
T |
|
| Q |
445 |
tagaccttgatgtgaatcatgccagtgtgtctgttgtgaatgatttgatgattcaacaagc |
505 |
Q |
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| T |
12886321 |
ttgacctagaagtgcaccatgccagtgtgtctgtggtaaatgatttgatgatacaacaagc |
12886381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 12885897 - 12886003
Alignment:
| Q |
21 |
gaaccattgaatcatgtagaagcagagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaatgg |
120 |
Q |
| |
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||||| ||||||||||| ||||| ||||| ||||||||||| ||||| || |||| ||||||||| || || || || ||||| |||||||| || |||| |
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| T |
12885897 |
gaaccgttgaatcatgttgaagctgagaggcaaagaagagagaagctgaatcagagattctatgcacttcgagcggttgttcctaatgtttcaaagatgg |
12885996 |
T |
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| Q |
121 |
acaaagc |
127 |
Q |
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| T |
12885997 |
acaaagc |
12886003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 38660577 - 38660705
Alignment:
| Q |
21 |
gaaccattgaatcatgtagaagcagagagacaaagaagagaaaagcttaaccagaaattctatgctctacgtgctgtggttccaaatgtttctaaaatgg |
120 |
Q |
| |
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|||||| |||||||||| ||||| ||||| |||||| | || ||||||||||||| ||| || || || | ||||| ||||| || |||||||||||| |
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| T |
38660577 |
gaaccactgaatcatgttgaagcggagaggcaaagacgggagaagcttaaccagagattttacgccttaagagctgttgttcctaacatttctaaaatgg |
38660676 |
T |
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| Q |
121 |
acaaagcatcgctcctaggcgatgctatt |
149 |
Q |
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|||| || || || || |||||||||||| |
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| T |
38660677 |
acaaggcttctcttcttggcgatgctatt |
38660705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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