View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_high_5 (Length: 481)
Name: NF8102_high_5
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 89 - 464
Target Start/End: Original strand, 55258776 - 55259151
Alignment:
| Q |
89 |
ctcactgggaagcatgttgatgtccttatgaaaccctttgttgtgaatgtggagaagggcattatcatcaggaggagaatgaaccaatggcttctcatct |
188 |
Q |
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| T |
55258776 |
ctcactgggaagcatgttgatgtccttatgaaaccctttgttgtgaatgtggagaagggcattatcatcaggaggagaatgaaccaatggcttctcatct |
55258875 |
T |
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| Q |
189 |
tcaacaggaatggcagctttctgagctaaaacactcaagatagtacatttgtgaacaagttgatatctgagattatcagtcaacccgccagaatgagaat |
288 |
Q |
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| T |
55258876 |
tcaacaggaatggcagctttctgagctaaaacactcaagatagtacatttgtgaacaagttgatatctgagattatcagtcaacccgccagaatgagaat |
55258975 |
T |
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| Q |
289 |
ccaattgagaatgaggttttgaagaacaaccccaaatgaatgcacccttgtgaagaaaaagatcaaaagccatgaaaatcaagcaaatgaatcaatctac |
388 |
Q |
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| T |
55258976 |
ccaattgagaatgaggttttgaagaacaaccccaaatgaatgcacccttgtgaagaaaaagatcaaaagccatgaaaatcaagcaaatgaatcaatctac |
55259075 |
T |
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| Q |
389 |
aacactatagtatcaatgaatcaagtaaatgaatgataatagatggaagacaagctcaatattcagtgttcagagt |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55259076 |
aacactatagtatcaatgaatcaagtaaatgaatgataatagatggaagacaagctcaatattcagtgttcagagt |
55259151 |
T |
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