View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_high_9 (Length: 408)
Name: NF8102_high_9
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 43397559 - 43397205
Alignment:
| Q |
19 |
gttagtcgcgcttaagacgtcttgtccaaccatgaggacgctcagtttaccagtcaccaaaaggctttccatgtccacctgtaaa-caatcttcaacact |
117 |
Q |
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| T |
43397559 |
gttagtcgcgcttaagacgtcttgtccaaccatgaggacgctcagtttaccagtcaccaaaaggctttccatgtccacctgtaaagcaatcttcaacact |
43397460 |
T |
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| Q |
118 |
atatcagcaaactaagtataagcctgctaaattatttacaatgtccataaaaaattttcaagtgatcatgagttaataatttctgtttttattccaacaa |
217 |
Q |
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| T |
43397459 |
atatcagcaaactaagtataagcctgctaaattatttacaatgtccataaatttttttcaagtgatcatgagttaataatttctgtttttattccaacaa |
43397360 |
T |
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| Q |
218 |
attacaaaaccatgtttgaaggcaataacaaatcgacacnnnnnnngtcatcaaggcaaagctcaaggagatgaactaagatgtttgaactagttctata |
317 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |
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| T |
43397359 |
attacaaaaccatgtttgaaggcaataacaaatggacacaaaaaaagtcatcaaggcaaagctcaaggagatgaactaagaagtttgaaatagttcgata |
43397260 |
T |
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| Q |
318 |
a--------acgatttaaattccgtctgttaacataacatactaaaatcctatat |
364 |
Q |
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| T |
43397259 |
aagagatatatgattcaaattccgactattaacataacatactaaaatcctatat |
43397205 |
T |
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