View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_low_1 (Length: 626)
Name: NF8102_low_1
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 339
Target Start/End: Original strand, 31300159 - 31300488
Alignment:
| Q |
10 |
tgagaagaagaataagaagaaagctgagattttgtacaatgctattgatgagagtaatgggttttttaagtgtcctgttgagaaatctgttaggtctttg |
109 |
Q |
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| T |
31300159 |
tgagaagaagaataagaagaaagctgagattttgtacaatgctattgatgagagtaatgggttttttaagtgtcctgttgagaaatctgttaggtctttg |
31300258 |
T |
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| Q |
110 |
atgaatgttccttttactttggagaaatcagagttggaaggtgagtttattaaggaagctgctaaggagaatatggttcagcttaagggacataggtctg |
209 |
Q |
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| T |
31300259 |
atgaatgttcctttcactttggagaaatcagagttggaaggtgagtttattaaggaagctgctaaggagaatatggttcagcttaagggacataggtctg |
31300358 |
T |
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| Q |
210 |
ttggtggtatgagagcttcaatttacaatgctatgcctttggctggtgttgagaagttggtggctttcatgaagaattttcaagcaaagcatgcttagat |
309 |
Q |
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| T |
31300359 |
ttggtggtatgagagcttcaatttacaatgctatgcctttggctggtgttgagaagttggtggctttcatgaagaattttcaagcaaagcatgcttagat |
31300458 |
T |
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| Q |
310 |
tgtgtttagtatatgcacttgtctctagca |
339 |
Q |
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| T |
31300459 |
tgtgtttagtatatgcacttgtctctagca |
31300488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 394 - 600
Target Start/End: Original strand, 31300543 - 31300749
Alignment:
| Q |
394 |
agtacttatttacaatttgggatgattttgattctggtcaaaagggatggctaagggtttaggaaggttttggaatttattaataatttggaagtttgtt |
493 |
Q |
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| T |
31300543 |
agtacttatttacaatttgggatgattttgattctggtcaaaagggatggctaagggtttaggaaggttttggaatttattaataatttggaagtttgtt |
31300642 |
T |
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| Q |
494 |
gtatggtgagtcccatgtgatattagtgaatgtaagatgaaatgtagtttcaaacctcaataaagtcaatgaagatgaaacattgaacaatgaatgtgtg |
593 |
Q |
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| T |
31300643 |
gtatggtgagtcccatgtgatattagtgaatgtaagatgaaatgtagtttcaaacctcaataaagtcaatgaagatgaaacattgaacaatgaatgtgtg |
31300742 |
T |
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| Q |
594 |
tgtttta |
600 |
Q |
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| T |
31300743 |
tgtttta |
31300749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 39 - 136
Target Start/End: Original strand, 13232311 - 13232408
Alignment:
| Q |
39 |
ttttgtacaatgctattgatgagagtaatgggttttttaagtgtcctgttgagaaatctgttaggtctttgatgaatgttccttttactttggagaaa |
136 |
Q |
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| T |
13232311 |
ttttgtataatgatattgatgagagcaatgagttttttaggtgtcatgttgagaaatctgttaggtctttgatgaatgttcctttcactttggagaaa |
13232408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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