View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8102_low_10 (Length: 412)
Name: NF8102_low_10
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_10 |
 | |
|
| [»] scaffold0188 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 61 - 354
Target Start/End: Complemental strand, 35607501 - 35607208
Alignment:
| Q |
61 |
aaaataccaacatagaagaaaagcaaggaacaaaataatctagaacaatctgaatgaaaccgtaacctttcaagctatccaaggtctcatttgcaattga |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35607501 |
aaaataccaacatagaagaaaagcaaggaacaaaataatctagaacaaactgaatgaaaccgtaacctttcaagctatccaaggtctcatttgcaattga |
35607402 |
T |
|
| Q |
161 |
aaatgaagtataagacaatgacagttgaactttgttgtgaaaatgaagtataagataatgacactaatttgttccattaaggtctcatttgcaattgaaa |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35607401 |
aaatgaagtataagacaatgacagttgaactttgttctgaaaatgaagtataagataatgacactaatttgttccattaaggtctcatttgcaattgaaa |
35607302 |
T |
|
| Q |
261 |
gtaatgtaaaaagaaagcctcaaacaatttggtatgcatgtcgaaataagtttgatactgacctcaaactatgctgctcaaaatgaatgaaaac |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
35607301 |
gtaatgtaaaaagaaagcctcaaacaatttggtatgcatgtcgaaataagtttgatactaacctcaaactatgctactcaaaatgaatgaaaac |
35607208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 30926 - 30960
Alignment:
| Q |
225 |
taatttgttccattaaggtctcatttgcaattgaa |
259 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
30926 |
taatttgttctattaaggtctcatttgcaattgaa |
30960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 259
Target Start/End: Complemental strand, 29136673 - 29136639
Alignment:
| Q |
225 |
taatttgttccattaaggtctcatttgcaattgaa |
259 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |
|
|
| T |
29136673 |
taatttgttctattaaggtctcatttgcaattgaa |
29136639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University