View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_low_16 (Length: 301)
Name: NF8102_low_16
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 29206910 - 29206680
Alignment:
| Q |
16 |
agagacaagaggaaaagttgatgaaggtattaggaacataataattaatcaagatatatgatactaatagtgagagtgagagcaatattttttactaatt |
115 |
Q |
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| T |
29206910 |
agagacaagaggagaagttgatgaaggtattaggaacataataattaatcaagatatatgatactaatagtgagagtgagagcaatatttt--actaatt |
29206813 |
T |
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| Q |
116 |
aattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaattgatgccttattttgataagccatt |
215 |
Q |
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| T |
29206812 |
aattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaattgatgccttactttgataagccatt |
29206713 |
T |
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| Q |
216 |
cttcccacaaaggtaaataacaaaggatggtgt |
248 |
Q |
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| T |
29206712 |
cttcccacaaaggtaaataacaaaggatggtgt |
29206680 |
T |
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Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 38379279 - 38379509
Alignment:
| Q |
16 |
agagacaagaggaaaagttgatgaaggtatt-aggaacataataattaatcaagatatatgatactaatagtgagagtgagagcaatatttttta----c |
110 |
Q |
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|||||||||| || ||||||||||||||||| ||| |||||||||| || | ||||||||||||||| ||| | ||||| |||||||| | | |
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| T |
38379279 |
agagacaagaagagaagttgatgaaggtatttaggcacataataatgaag--atatatatgatactaattatgaaaatgagattaatattttagagaagc |
38379376 |
T |
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| Q |
111 |
taattaattcaatatggaacagatgattgaagaggaagagatacgtttgcttaggaaagaaatggttccacgagctcaattgatgccttattttgataag |
210 |
Q |
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| T |
38379377 |
taattaatgaaatgtggaatagatgattgaagaggaagagatacgtgtgctaaggaaggatatggttccaagagctcaattaatgccttattttgataag |
38379476 |
T |
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| Q |
211 |
ccattcttcccacaaaggtaaataacaaaggat |
243 |
Q |
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||||||| |||| | ||||||||||||| |||| |
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| T |
38379477 |
ccattctccccaaataggtaaataacaatggat |
38379509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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