View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_low_17 (Length: 297)
Name: NF8102_low_17
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 39278768 - 39278496
Alignment:
| Q |
15 |
cattatccatataaaaaacggatagcaaaataaaagtttcttgaaaaatgcgatgtgtgataggaggaccttagcaatgaagttaatgaatcctttatcc |
114 |
Q |
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| T |
39278768 |
cattatccatataaaaaacggatagcaaaataaaagtttcttgaaaaatgcgatgtgtgataggaggaccttagcaatgaagttaatgaatcctttatcc |
39278669 |
T |
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| Q |
115 |
ttattcttttttattcaaaagcttgacataagaaactttcggttgggacttgaattgggtgtttaactgtttaaggagattggatagaataaagaatggg |
214 |
Q |
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| T |
39278668 |
ttattcttttttattcaaaagcttgacataagaaactttcggttgggacttgaattgggtctttaactgtttaaggagattggatagaataaagaatggg |
39278569 |
T |
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| Q |
215 |
aagattctgagtgaccttaattgcttggaaac-nnnnnnnncttgtgattcgtgcttaatggacacaattcat |
286 |
Q |
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| T |
39278568 |
aagattctgagtgaccttaattgcttggaaacaaaaaaaaacttgtgattcgtgcttaatggacacaattcat |
39278496 |
T |
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