View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_low_19 (Length: 283)
Name: NF8102_low_19
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 29206951 - 29207222
Alignment:
| Q |
1 |
aaaaccacattcatcaataaatgaaaattataatactatgttggacattgataattcactatatatcttacttcatagttgaacattgcacgtttgacag |
100 |
Q |
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| T |
29206951 |
aaaaccacattcatcaataaatgaaaattataatactatgttggacattgataattcactatatatcttacttcatagttgaacattgcacgtttgacag |
29207050 |
T |
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| Q |
101 |
ctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattttcttgaaccctaaacaaacacaaaaatgattcaccgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207051 |
ctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattttcttgaaccctaaacaaacacaaaaatgattcaccgaaa |
29207150 |
T |
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| Q |
201 |
tgtgaaaaatgaaatggacatacaaagtagtaatacatgttagtgtaccatgtaattccttaccttattctt |
272 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207151 |
tgtgaaaaatgaaatggacatactaagtagtaatacatgttagtgtaccatgtaattccttaccttattctt |
29207222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 62 - 188
Target Start/End: Complemental strand, 38379175 - 38379049
Alignment:
| Q |
62 |
tatatcttacttcatagttgaacattgcacgtttgacagctctttcttgtgtgtggagtttgaattcttgtggttttgtattttcttttgtaggagattt |
161 |
Q |
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||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||| | ||||||||||| ||||||||||| |
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| T |
38379175 |
tatatcttacttcgtagttgaatattgcacgtttgactgctctttcttgagtgtggagtttgaattcttttggtctagtattttctttggtaggagattt |
38379076 |
T |
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| Q |
162 |
tcttgaaccctaaacaaacacaaaaat |
188 |
Q |
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||||||| ||| |||||||| |||||| |
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| T |
38379075 |
tcttgaagcctgaacaaacagaaaaat |
38379049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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