View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_low_2 (Length: 595)
Name: NF8102_low_2
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 1 - 591
Target Start/End: Complemental strand, 52424091 - 52423501
Alignment:
| Q |
1 |
aaaagtgtacaacaatttcgaactacacttacacaaagcagcaaaagtcagaaacaaatgcagtaaatcgccaaaataaggcaaaaaactccaacataga |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52424091 |
aaaagtgtacaacgatttcgaactacacttacacaaagcagcaaaagtcagaaacaaatgcagtaaatcgccaaaataaggcaaaaaactccaacataga |
52423992 |
T |
|
| Q |
101 |
acagatagacggccactacaccccaacaccgcaaaataaaataaccaacaaccttgatgactaaagagaccaagctgcccatactagaaactaagctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423991 |
acagatagacggccactacaccccaacaccgcaaaataaaataaccaacaaccttgatgactaaagagaccaagctgcccatactagaaactaagctgaa |
52423892 |
T |
|
| Q |
201 |
accataacagaccaaaacaaaccaaaattggaacaagctaattagttcacaatgaggcaaaatcctaatcaatagaaacttggagaatgctaaaaagtcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423891 |
accataacagaccaaaacaaaccaaaattggaacaagctaattagttcacaatgaggcaaaatcctaatcaatagaaacttggagaatgctaaaaagtcc |
52423792 |
T |
|
| Q |
301 |
aatcaaacaaaggatcaatctcttgcaacttactcaaataagagttaatactcagcacggaaacaagatgaccaacaacattcaaagactctaaaacaca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52423791 |
aatcaaacaaaggatcaatctcttgcaacttactcaaataagagttaatactcagcacggaaacaagatgaccaacaacattcaaagactctaaaacaca |
52423692 |
T |
|
| Q |
401 |
aatagtcagagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcatcaactgcctctccttcacaatacgccacat |
500 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
52423691 |
aatagtcaaagaaaccgcatccaccttaagacaaagctactgacaacagaagaggaagaataccattcaccaactgcctctccttcacaatacgccacat |
52423592 |
T |
|
| Q |
501 |
aattagcaaaaacacaccacacagagtcctaagactaaaactaacagtacaaggtccaggaaatgaggcatcaacagagcaaaaagccact |
591 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
52423591 |
aattagcaaagacacaccacacagagtcctaagactaaaactaacagtacaaggtccacgaaatgaggcatcaacagagcaaaaagccact |
52423501 |
T |
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