View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8102_low_27 (Length: 240)

Name: NF8102_low_27
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8102_low_27
NF8102_low_27
[»] chr1 (6 HSPs)
chr1 (90-229)||(46821802-46821941)
chr1 (122-229)||(46828134-46828241)
chr1 (33-88)||(45970002-45970057)
chr1 (37-100)||(38459399-38459461)
chr1 (39-89)||(26853111-26853161)
chr1 (37-89)||(38460695-38460746)
[»] chr6 (8 HSPs)
chr6 (18-94)||(25054567-25054643)
chr6 (18-89)||(30780397-30780468)
chr6 (20-89)||(3962668-3962737)
chr6 (18-89)||(17193740-17193811)
chr6 (37-90)||(17193887-17193940)
chr6 (37-90)||(25054438-25054491)
chr6 (37-90)||(30780268-30780321)
chr6 (37-89)||(3962538-3962590)
[»] chr5 (11 HSPs)
chr5 (18-90)||(8881021-8881093)
chr5 (18-94)||(17534540-17534616)
chr5 (18-89)||(11772869-11772940)
chr5 (37-94)||(17534692-17534749)
chr5 (37-89)||(11772741-11772793)
chr5 (47-92)||(8881095-8881140)
chr5 (56-95)||(244229-244268)
chr5 (60-90)||(11772956-11772986)
chr5 (39-89)||(43514489-43514539)
chr5 (56-89)||(245988-246021)
chr5 (39-92)||(43513815-43513868)
[»] chr8 (8 HSPs)
chr8 (18-89)||(10756578-10756649)
chr8 (18-89)||(29740037-29740108)
chr8 (37-91)||(29739907-29739961)
chr8 (37-89)||(10756450-10756502)
chr8 (33-86)||(11128887-11128940)
chr8 (53-89)||(27887565-27887601)
chr8 (53-89)||(27946223-27946259)
chr8 (53-89)||(28026466-28026502)
[»] chr3 (5 HSPs)
chr3 (18-88)||(34630716-34630786)
chr3 (23-89)||(46905406-46905472)
chr3 (37-90)||(34630588-34630641)
chr3 (39-89)||(22899519-22899569)
chr3 (37-89)||(46906267-46906319)
[»] chr4 (5 HSPs)
chr4 (18-86)||(51268453-51268521)
chr4 (37-89)||(51268324-51268376)
chr4 (39-89)||(29337158-29337208)
chr4 (39-89)||(44891723-44891773)
chr4 (53-85)||(12157302-12157334)
[»] chr2 (3 HSPs)
chr2 (33-91)||(18900622-18900680)
chr2 (39-90)||(45627809-45627860)
chr2 (39-90)||(44995643-44995694)
[»] chr7 (3 HSPs)
chr7 (37-89)||(43406316-43406368)
chr7 (56-90)||(43405458-43405492)
chr7 (18-51)||(43405484-43405517)


Alignment Details
Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 90 - 229
Target Start/End: Original strand, 46821802 - 46821941
Alignment:
Q  90 taaatttaaatatgtggatattcttaaaaccgtgaataagtgtgacatcacaatattgttctcatcccaaaaatttctcatacattgatttccaatttcc 189  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46821802 taaatttaaatatgtggatatactcaaaaccgtgaataagtgtgacatcacaatattgttctcatcccaaaaatttctcatacattgatttccaatttcc 46821901  T
Q  190 aaagacaacatatcaagtttaggaacacgtagttcttctt 229  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46821902 aaagacaacatatcaagtttaggaacacgtagttcttctt 46821941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 46828134 - 46828241
Alignment:
Q  122 tgaataagtgtgacatcacaatattgttctcatcccaaaaatttctcatacattgatttccaatttccaaagacaacatatcaagtttaggaacacgtag 221  Q
    |||| |||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||     
T  46828134 tgaaaaagtgtgacatcacaatattgtttccatcccaaaaatttatcatgcattgatttccaatttccaaagacaacatatcaagtttagcaacacgtat 46828233  T
Q  222 ttcttctt 229  Q
    ||||||||    
T  46828234 ttcttctt 46828241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 45970057 - 45970002
Alignment:
Q  33 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 88  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  45970057 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttct 45970002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 38459461 - 38459399
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaaatttaaat 100  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||||  |||||||    
T  38459461 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctctaggtttaaat 38459399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 26853111 - 26853161
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  26853111 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 26853161  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 38460695 - 38460746
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  38460695 ttattggagtgtgtt-aaagagtgtgttagggagtgtgtccctagcatttctc 38460746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 25054567 - 25054643
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054567 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaaat 25054643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 30780397 - 30780468
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780397 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 30780468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 3962668 - 3962737
Alignment:
Q  20 gatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962668 gatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 17193811 - 17193740
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193811 gggatgatgtgtcaacatattattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 17193740  T

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Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 90
Target Start/End: Original strand, 17193887 - 17193940
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17193887 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 17193940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 25054491 - 25054438
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25054491 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 25054438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 30780321 - 30780268
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30780321 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 30780268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 3962590 - 3962538
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3962590 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 3962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 8881093 - 8881021
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8881093 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 8881021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 17534616 - 17534540
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaaat 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17534616 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcaaaat 17534540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 11772869 - 11772940
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772869 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 17534692 - 17534749
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaaat 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17534692 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcaaaat 17534749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 11772793 - 11772741
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11772793 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 11772741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 8881095 - 8881140
Alignment:
Q  47 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8881095 gtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 8881140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 244268 - 244229
Alignment:
Q  56 gagtgtgtttgagagtttgtccttagcatttctctaaatt 95  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  244268 gagtgtgtttgagagtttgtccgtagcatttctctcaatt 244229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 90
Target Start/End: Original strand, 11772956 - 11772986
Alignment:
Q  60 gtgtttgagagtttgtccttagcatttctct 90  Q
    |||||||||||||||||||||||||||||||    
T  11772956 gtgtttgagagtttgtccttagcatttctct 11772986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 43514489 - 43514539
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  43514489 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 43514539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 89
Target Start/End: Original strand, 245988 - 246021
Alignment:
Q  56 gagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||||||||||||||| |||||||||||    
T  245988 gagtgtgtttgagagtttgtccatagcatttctc 246021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 43513868 - 43513815
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctctaa 92  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||| |||||    
T  43513868 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttatctaa 43513815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 10756578 - 10756649
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756578 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 29740037 - 29740108
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29740037 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 29740108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 29739961 - 29739907
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29739961 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 29739907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 10756502 - 10756450
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10756502 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 10756450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 86
Target Start/End: Original strand, 11128887 - 11128940
Alignment:
Q  33 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 86  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  11128887 catgtcattggagggtgttaaaagagtgtgtttgagagtgtgtccttagcattt 11128940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 27887565 - 27887601
Alignment:
Q  53 aaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27887565 aaagagtgtgatagagagtttgtccttagcatttctc 27887601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 27946223 - 27946259
Alignment:
Q  53 aaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||| | ||||||||||||||||||||||||    
T  27946223 aaagagtgtgatagagagtttgtccttagcatttctc 27946259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 28026466 - 28026502
Alignment:
Q  53 aaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||| | ||||||||||||||||||||||||    
T  28026466 aaagagtgtgatagagagtttgtccttagcatttctc 28026502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 34630716 - 34630786
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 88  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34630716 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttct 34630786  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 46905472 - 46905406
Alignment:
Q  23 gatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  46905472 gatgtatcaacatgttattggagtgtgttgaaagtgtgtgtttgagagtttatccttagcatttctc 46905406  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 34630641 - 34630588
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 90  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34630641 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 34630588  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 22899519 - 22899569
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22899519 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 22899569  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 46906267 - 46906319
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||    
T  46906267 ttattggagtgtgtaaaaagagtgtgtttgagggtttgtccttagcatttctc 46906319  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 51268453 - 51268521
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51268453 gggatgatgtgtcaacatgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcattt 51268521  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 51268376 - 51268324
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51268376 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 51268324  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 29337208 - 29337158
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||| ||||||| |||||||||||| |||||| ||||| |||||||||||    
T  29337208 attggtgtgtgttaaaagagtgtgttagagagtgtgtccctagcatttctc 29337158  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 44891773 - 44891723
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||| |||||||||||| | |||| ||||| |||||||||||    
T  44891773 attggagtgtgttaaaagagtgtgttagggagtgtgtccctagcatttctc 44891723  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 85
Target Start/End: Original strand, 12157302 - 12157334
Alignment:
Q  53 aaagagtgtgtttgagagtttgtccttagcatt 85  Q
    |||||||||||| ||||||||||||||||||||    
T  12157302 aaagagtgtgttagagagtttgtccttagcatt 12157334  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 18900680 - 18900622
Alignment:
Q  33 catgttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctcta 91  Q
    ||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||    
T  18900680 catgtcattggagagtgttaaaagagtgtgtttgagagtgtgtccttagcatttctcta 18900622  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 45627860 - 45627809
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 90  Q
    ||||||||||||| |||||||||||| | |||||||||| ||||||||||||    
T  45627860 attggagtgtgttaaaagagtgtgttagggagtttgtccctagcatttctct 45627809  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 44995694 - 44995643
Alignment:
Q  39 attggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctct 90  Q
    ||||||||||||| ||||||| |||| |||||||||||| | ||||||||||    
T  44995694 attggagtgtgttaaaagagtatgttagagagtttgtccctggcatttctct 44995643  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 89
Target Start/End: Original strand, 43406316 - 43406368
Alignment:
Q  37 ttattggagtgtgttgaaagagtgtgtttgagagtttgtccttagcatttctc 89  Q
    ||||||||||||||  |||||||||||||||| |||| |||||||||||||||    
T  43406316 ttattggagtgtgtcaaaagagtgtgtttgagggtttatccttagcatttctc 43406368  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 43405492 - 43405458
Alignment:
Q  56 gagtgtgtttgagagtttgtccttagcatttctct 90  Q
    |||||||||||||||||||||||||||||||||||    
T  43405492 gagtgtgtttgagagtttgtccttagcatttctct 43405458  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 43405517 - 43405484
Alignment:
Q  18 gggatgatgtgtcaacatgttattggagtgtgtt 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  43405517 gggatgacgtgtcaacatgttattggagtgtgtt 43405484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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