View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_low_3 (Length: 559)
Name: NF8102_low_3
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 544
Target Start/End: Complemental strand, 39378568 - 39378025
Alignment:
| Q |
1 |
cttctaatcctcaaggttcttctcctcctgcaatcgccgcaatgccgaagaattttgataatgattctcctcaatcaccaacaacagagtcttcagagaa |
100 |
Q |
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| T |
39378568 |
cttctaatcctcaaggttcttctcctcctgcactcgccgcaatgccgaagaattttgataatgattctcctcaatcacaaacaacagagtcttcagagaa |
39378469 |
T |
|
| Q |
101 |
gaaacagagtggtttgagaaaaggaactattataggaattgttattggtgatttcgttggaattggaatcttagctatggtttttgtttatgtttataag |
200 |
Q |
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| T |
39378468 |
gaaacagagtggtttgagaaaaggaactattataggaattgttattggtgatttcgttggaattggaatcttagctatggtttttgtttatgtttataag |
39378369 |
T |
|
| Q |
201 |
ctaaagagnnnnnnngatgcggaaaatgcaataaaaaatgaagctgctactacaagaagtgagaattcttcttcaaccttagagacaaaagggtttacaa |
300 |
Q |
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| T |
39378368 |
ctaaagagaaaaaaagatgcggaaaatgcaataaaaaatgaagttgctactgcaagaagtgagaattcttcatcaaccttagagacaaaagggtttacaa |
39378269 |
T |
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| Q |
301 |
ggtggtcttgtttaagaaaaagaacagaagatgaagaatcctcagagacacaaagttcttcagatagtgacgtggaaatatcacnnnnnnntgttgatgt |
400 |
Q |
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| T |
39378268 |
ggtggtcttgtttaagaaaaagaacagaagatgaagaatcctcggagacacaaagttcttcagatagtgacgtggaaatatcacaaaaaaatgttgatgc |
39378169 |
T |
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| Q |
401 |
tgagaatcaaaagcaaggtgagaataaagctggtacgggttcgggtacgggcactctggtcatagttgatggtgaaagagagcttgaagtggaaacactt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39378168 |
tgagaatcaaaagcaaggtgagaataaagctggtacgggttcgggtacaggcactctggtcatagttgatggtgaaagagagcttgaagtggaaacactt |
39378069 |
T |
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| Q |
501 |
ttgaaagcttctgcgtatattttaggagctactggttcaagtat |
544 |
Q |
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| T |
39378068 |
ttgaaagcttctgcgtatattttaggagctactggttcaagtat |
39378025 |
T |
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