View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8102_low_6 (Length: 522)

Name: NF8102_low_6
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8102_low_6
NF8102_low_6
[»] chr3 (4 HSPs)
chr3 (274-506)||(5695851-5696075)
chr3 (335-506)||(5794396-5794556)
chr3 (35-178)||(5794057-5794199)
chr3 (200-282)||(5794236-5794318)
[»] chr7 (1 HSPs)
chr7 (14-277)||(7112499-7112776)
[»] chr4 (4 HSPs)
chr4 (365-506)||(9419105-9419246)
chr4 (419-506)||(9430248-9430335)
chr4 (14-139)||(9410482-9410607)
chr4 (201-256)||(9410349-9410405)
[»] chr1 (2 HSPs)
chr1 (16-157)||(9975892-9976033)
chr1 (200-242)||(9976091-9976133)
[»] chr8 (2 HSPs)
chr8 (14-111)||(41484860-41484957)
chr8 (200-278)||(41484693-41484771)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 274 - 506
Target Start/End: Original strand, 5695851 - 5696075
Alignment:
Q  274 cattgcatttcattaaatgaacagatttagcaacaagagctgaagttaaaag-caaaaaatttcaatatgaaccctcttggttgagtaaaggaaaatttt 372  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||    
T  5695851 cattgcatttcattaaatgaacagatttagcaaccagatctgaagttaaaaggcaaaatatttcaatatgaaccctcttggttgagtaaaagaaaatttt 5695950  T
Q  373 caccacaattgatatgaatttcgtgcataaaagttggaagaaaacttaactgcatattgaatgacaaaatttcatgccttctacattatatcattatata 472  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||       |||||||||| |   |||| |||||||||||||||    
T  5695951 caccacaattgatatgattttcgtgcataaaagttggaagaaaacttaactgaatatt------taaaatttcatac---ctaccttatatcattatata 5696041  T
Q  473 agtttactatctttgagattgatttgttctttat 506  Q
    |||||| |||||||||||||| ||||||||||||    
T  5696042 agtttattatctttgagattggtttgttctttat 5696075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 335 - 506
Target Start/End: Original strand, 5794396 - 5794556
Alignment:
Q  335 tcaatatgaaccctcttggttgagtaaaggaaaattttcaccacaattgatatgaatttcgtgcataaaagttggaagaaaacttaactgcatattgaat 434  Q
    ||||||||||||||| || |||||   |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  5794396 tcaatatgaaccctcatgcttgagaggaggaaaattttcaccacaattgatatgattttcgtgcataaaagttggaagaaaacctaactgcatattgaat 5794495  T
Q  435 gacaaaatttcatgccttctacattatatcattatataagtttactatctttgagattgatttgttctttat 506  Q
    ||||||||||||| |||            | ||||||||||| |||||||||||||| ||||||||||||||    
T  5794496 gacaaaatttcatacct-----------accttatataagttaactatctttgagatagatttgttctttat 5794556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 5794057 - 5794199
Alignment:
Q  35 ttttaaaatttgttctaattctaatccatttcatagcagatatttatgcattctatttctaaatatcattttactctaatttgtttttattatcctttca 134  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||  |||||||| ||||||||||||||| | |||||| ||||| |||||||||||    
T  5794057 ttttaaaatttgttctaattctaatgcatttcatagcagatatttatatattctatt-ctaaatatcattttattttaatttatttttcttatcctttca 5794155  T
Q  135 tctgacaatcgaaaaaggaattaattattcattcaaatttgttc 178  Q
    |||||||| ||| ||| ||||||||| |||||| | ||||||||    
T  5794156 tctgacaaccgagaaatgaattaattgttcatttagatttgttc 5794199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 5794236 - 5794318
Alignment:
Q  200 tttggagtttaatattaggtgaatctgtatattcctcttcttaggcaagtctaatatctgtttatcattcattgcattgcatt 282  Q
    ||||||||||| |||||||||||| | |||||||||||||||||| ||||||  |||   |||||||||||||||||| ||||    
T  5794236 tttggagtttactattaggtgaatttatatattcctcttcttaggaaagtctggtattactttatcattcattgcatttcatt 5794318  T

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Target: chr7 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 7112776 - 7112499
Alignment:
Q  14 agatctcaatctatttttgctttttaaaatttgttctaattctaatccatttcatagcagatatttatgcattctatttctaaatatcattttactctaa 113  Q
    |||||||| ||||||||| ||||| ||||| |||||||||| ||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||    
T  7112776 agatctcattctattttttcttttaaaaatgtgttctaattttaatccattgcatatcagatatt-atgcattctatttctaaatatcattttactctaa 7112678  T
Q  114 tttgtttttattatcctttcatctgacaatcgaaaaaggaattaattattcattcaaatttg---ttccttaaccttaacacttg------------aag 198  Q
    ||||||||| |||||| ||||||||||||  || |||| ||||| || |||||||| |||||   ||| || ||| ||| |||||             |     
T  7112677 tttgtttttcttatcccttcatctgacaactgagaaagaaattagttgttcattcagatttgtttttctttgaccctaagacttggaaatggaacatgaa 7112578  T
Q  199 atttggagtttaatattaggtgaatctgtatattcctcttcttaggcaagtctaatatctgtttatcattcattgcatt 277  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||| ||||| || | ||||||||||||||||||    
T  7112577 atttggagtttaatattaggttaatttgtatattcctcttcttagacaattctaaaatttctttatcattcattgcatt 7112499  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 365 - 506
Target Start/End: Complemental strand, 9419246 - 9419105
Alignment:
Q  365 aaaattttcaccacaattgatatgaatttcgtgcataaaagttggaagaaaacttaactgcatattgaatgacaaaatttcatgccttctacattatatc 464  Q
    |||||| |||||||| ||||||||| ||| |||||||||| ||||||||||| |||||| |||| ||||| | |||||| ||| || ||||  |||||||    
T  9419246 aaaattctcaccacatttgatatgatttttgtgcataaaatttggaagaaaaattaactacatagtgaataataaaattccataccgtctatcttatatc 9419147  T
Q  465 attatataagtttactatctttgagattgatttgttctttat 506  Q
     |||||||| ||||||||||||||||| |||||||| |||||    
T  9419146 cttatataattttactatctttgagatggatttgttttttat 9419105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 419 - 506
Target Start/End: Complemental strand, 9430335 - 9430248
Alignment:
Q  419 taactgcatattgaatgacaaaatttcatgccttctacattatatcattatataagtttactatctttgagattgatttgttctttat 506  Q
    ||||| |||| |||||||||||||| ||| |||||||| ||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  9430335 taactacatagtgaatgacaaaattccataccttctaccttatatccttatataattttactatctttgagatggatttgttctttat 9430248  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 9410607 - 9410482
Alignment:
Q  14 agatctcaatctatttttgctttttaaaatttgttctaattctaatccatttcatagcagatatttatgcattctatttctaaatatcattttactctaa 113  Q
    |||||| | ||||||||| ||||| ||||| ||  | |||||||||| ||| |||||||| |||||||   |||||||||||||||| |||| |||||||    
T  9410607 agatcttattctattttttcttttaaaaatgtggccgaattctaatcaattgcatagcaggtatttattttttctatttctaaatattatttcactctaa 9410508  T
Q  114 tttgtttttattatcctttcatctga 139  Q
    ||||||||  ||||||||||| ||||    
T  9410507 tttgttttccttatcctttcacctga 9410482  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 9410405 - 9410349
Alignment:
Q  201 ttggagtttaatattaggtgaatctgtatattcctcttctta-ggcaagtctaatat 256  Q
    |||||||||||| |||||||||| ||||||||||||||  || ||||||||||||||    
T  9410405 ttggagtttaatgttaggtgaatttgtatattcctctttatagggcaagtctaatat 9410349  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 9975892 - 9976033
Alignment:
Q  16 atctcaatctatttttgctttttaaaatttgttctaattctaatccatttcatagcagatatttatgcattctatttctaaatatcattttactctaatt 115  Q
    |||||| ||||||||| || || ||||| |||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||| |||||| |||||    
T  9975892 atctcattctattttttctattaaaaatgtgttctaattttaatccattgcatagcagatatatatgcattctacttctaaatatcaatttactataatt 9975991  T
Q  116 tgtttttattatcctttcatctgacaatcgaaaaaggaatta 157  Q
    ||||||| | |   |||||||||||||  || ||||||||||    
T  9975992 tgtttttctcactgtttcatctgacaactgagaaaggaatta 9976033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 9976091 - 9976133
Alignment:
Q  200 tttggagtttaatattaggtgaatctgtatattcctcttctta 242  Q
    |||||||||||||||||||||||| ||||||||| ||||||||    
T  9976091 tttggagtttaatattaggtgaatttgtatattcatcttctta 9976133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 41484957 - 41484860
Alignment:
Q  14 agatctcaatctatttttgctttttaaaatttgttctaattctaatccatttcatagcagatatttatgcattctatttctaaatatcattttactct 111  Q
    |||| ||| ||||||||||||||| ||||| |||| | |||||| || ||| ||||| |||| ||| |||||||||||||||||||||||||||||||    
T  41484957 agatttcattctatttttgcttttaaaaatgtgttatgattctactctattgcatagtagatgtttttgcattctatttctaaatatcattttactct 41484860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 41484771 - 41484693
Alignment:
Q  200 tttggagtttaatattaggtgaatctgtatattcctcttcttaggcaagtctaatatctgtttatcattcattgcattg 278  Q
    |||||||||||||||||||||||| ||||||| | | ||||| |||||||||||||| | | | |||||||||||||||    
T  41484771 tttggagtttaatattaggtgaatttgtatatccttgttcttgggcaagtctaatatttctctttcattcattgcattg 41484693  T

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