View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8102_low_9 (Length: 414)
Name: NF8102_low_9
Description: NF8102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8102_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 153 - 402
Target Start/End: Original strand, 51437381 - 51437629
Alignment:
| Q |
153 |
aaaacaaaattgaactactaaacccctgcataccatttgaccctcttaaattagattaaacaaagatctttatcgaatgccaaaagannnnnnnatctaa |
252 |
Q |
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| T |
51437381 |
aaaacaaaattgaactactaa-cccctgcataccatttgaccctcttaaattagactaaacaaagatctttatcgaatgccaaaagatttttttatctaa |
51437479 |
T |
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| Q |
253 |
aaaatattcttaaaatcataatcctaatcctaatcctaattagattagatacagtcatttaaga-ccaaattaattatacaaggaataaaagtacggaaa |
351 |
Q |
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| T |
51437480 |
aaaatatttttaaaatcataatcctaatcctaatcctaattagattagatacagtcctttaagacccaaattaattatacaaggaataaaagtac-gaaa |
51437578 |
T |
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| Q |
352 |
aatggaaatgttttttgttttgtaatttgaaaaaacagagtagttcttctc |
402 |
Q |
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| T |
51437579 |
aatggaaatgttttttgttttgtaatttgaaaaaacagagtagttcctctc |
51437629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 23 - 161
Target Start/End: Original strand, 51436858 - 51436997
Alignment:
| Q |
23 |
acgaagaagaatatgaacattgatagaataatggacattctttgataaaaatgaaaatacgaaaaagataatagaaattgataaaccgtggatttttaa- |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51436858 |
acgaagaagaatatgaacattgatagaataatggacattctttgataaaaatgaaaatacgaaaaagataataggaattgataaaccgtggatttttaac |
51436957 |
T |
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| Q |
122 |
ctttcaaaataattaaaccacttctttcataaaaacaaaa |
161 |
Q |
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| T |
51436958 |
ctttcaaaataattaaaccacttctttcataaaaacaaaa |
51436997 |
T |
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