View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_high_11 (Length: 253)
Name: NF8103_high_11
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_high_11 |
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| [»] chr4 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 16867943 - 16867708
Alignment:
| Q |
18 |
gacaatgtggtacatgttcatctcataagtaacgtattcaatgatttgaaattatttatcgtctaactctagttaattttaatttaccttttgtaggatg |
117 |
Q |
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||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16867943 |
gacaatgtggtacgtgttcatctcataagtaacatattcaatgattcgaaattatttatcgtctaactctagttaattttaatttaccttttgtaggatg |
16867844 |
T |
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| Q |
118 |
ttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgatctctttatcagaacaagaactcgttgactgtgac |
217 |
Q |
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| T |
16867843 |
ttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgatctctttatcagaacaagaactcgttgactgtgac |
16867744 |
T |
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| Q |
218 |
acgaaaggtgtggaccaaggttgtgagggtggtctt |
253 |
Q |
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| T |
16867743 |
acgaaaggtgtggaccaaggttgtgagggtggtctt |
16867708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 253
Target Start/End: Complemental strand, 30720057 - 30719885
Alignment:
| Q |
82 |
aactctagttaattttaatttacctttt-gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagtt |
180 |
Q |
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| T |
30720057 |
aactctagttaattttaatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagtt |
30719958 |
T |
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| Q |
181 |
gatctctttatcagaacaagaactcgttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtctt |
253 |
Q |
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| T |
30719957 |
ggtctctttatcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtctt |
30719885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 253
Target Start/End: Original strand, 30892385 - 30892557
Alignment:
| Q |
82 |
aactctagttaattttaatttacctttt-gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagtt |
180 |
Q |
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| T |
30892385 |
aactctagttaattttaatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagtt |
30892484 |
T |
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| Q |
181 |
gatctctttatcagaacaagaactcgttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtctt |
253 |
Q |
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| T |
30892485 |
ggtctctttatcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtctt |
30892557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 85 - 253
Target Start/End: Original strand, 30881305 - 30881474
Alignment:
| Q |
85 |
tctagttaattttaatttacctttt-gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgat |
183 |
Q |
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| T |
30881305 |
tctagttaattttaatttacctttttgtaggatgttgttgggcattttctgctgttgcggcaaccgaaggaatccataagttgagtactgggaagttggt |
30881404 |
T |
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| Q |
184 |
ctctttatcagaacaagaactcgttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtctt |
253 |
Q |
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| T |
30881405 |
ctctttatcggaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtctt |
30881474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 94 - 253
Target Start/End: Complemental strand, 44731482 - 44731321
Alignment:
| Q |
94 |
ttttaatttacctttt--gtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgatctctttat |
191 |
Q |
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||||||||||| |||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
44731482 |
ttttaatttacgtttttcgtaggatgttgttgggcattttcagctgttgcagcaaccgaaggaattactaagttgagtactggaaagttggtctctttat |
44731383 |
T |
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| Q |
192 |
cagaacaagaactcgttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtctt |
253 |
Q |
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| T |
44731382 |
cggaacaagaacttgttgattgtgacacaaaaggtgtggaccaaggttgtgagggtggtctt |
44731321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 8898915 - 8899089
Alignment:
| Q |
79 |
tctaactctagttaattttaatttaccttttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaag |
178 |
Q |
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|||||||| || |||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8898915 |
tctaactcgggtaaattttaacttgcattttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaag |
8899014 |
T |
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| Q |
179 |
ttgatctctttatcagaacaagaactcgttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtctt |
253 |
Q |
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||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||| |
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| T |
8899015 |
ttggtctctttatcagaacaagaacttgttgattgtgacacaaaaggtgtagaccaaggttgtgagggtggtctt |
8899089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 107 - 253
Target Start/End: Original strand, 31727101 - 31727247
Alignment:
| Q |
107 |
tttgtaggatgttgttgggcgttttctgctgttgcagcaaccgaaggaattcataagttgagtactggaaagttgatctctttatcagaacaagaactcg |
206 |
Q |
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||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| || ||||| ||| |||||||||||||||||||||| | |
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| T |
31727101 |
tttgtaggatgttgttgggcgttttctgcggttgcatcaaccgaaggaattcataagttgaccacaggaaatttggtctctttatcagaacaagaacttg |
31727200 |
T |
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| Q |
207 |
ttgactgtgacacgaaaggtgtggaccaaggttgtgagggtggtctt |
253 |
Q |
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|||| |||||||| || |||| |||||||||||||||||||||||| |
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| T |
31727201 |
ttgattgtgacacaaatggtgaagaccaaggttgtgagggtggtctt |
31727247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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