View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_high_13 (Length: 252)
Name: NF8103_high_13
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 20529032 - 20529269
Alignment:
| Q |
4 |
gaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaacaaattcaaattatgct |
103 |
Q |
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| T |
20529032 |
gaggaagaattaacaagatttagttgaatgcaataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaccaaattcaaattatgct |
20529131 |
T |
|
| Q |
104 |
gaatttaaagaaggtgaatttcatctcatggctcaaacatgattgaacacaaatgccaaagatgaggtatggtttcttgattaaggttattataatcata |
203 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20529132 |
gaatttgaagatggtgaatttcatctcatggctcaaacatgattgaacacaaatgtcaaagatgaggtatggtttcttgattaaggttattataatcata |
20529231 |
T |
|
| Q |
204 |
tgataggaacaaaggattggttatttgattttgatgat |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20529232 |
tgataggaacaaaggattggttatttgattttgatgat |
20529269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 36 - 238
Target Start/End: Original strand, 3036695 - 3036898
Alignment:
| Q |
36 |
ataagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaacaaatt-caaattatgctgaatttaaagaaggtgaatttcatctcatgg |
134 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||||| ||| | ||||||||||| ||||| |||| |||||||| | ||| |||| |
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| T |
3036695 |
ataagtgtcacaagctgggacactatcagaatgaatgtcccctatgggaaaaaaaatgcaaattatgctcaatttgaagatggtgaattgcttctgatgg |
3036794 |
T |
|
| Q |
135 |
ctcaaacatgattgaacacaaatgccaaagatgaggtatggtttcttgattaaggttattataatcatatgataggaacaaaggattggttatttgattt |
234 |
Q |
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| T |
3036795 |
ctcaatcatgcatgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgctcaaatcatatgatagggacaaaggattggttattgaattt |
3036894 |
T |
|
| Q |
235 |
tgat |
238 |
Q |
| |
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|||| |
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| T |
3036895 |
tgat |
3036898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 38 - 237
Target Start/End: Original strand, 16863445 - 16863644
Alignment:
| Q |
38 |
aagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaacaaattcaaattatgctgaatttaaagaaggtgaatttcatctcatggctc |
137 |
Q |
| |
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|||||||||||||| ||||||||||| |||||||||| |||||||||| |||| || | |||| ||| ||| |||| |||||||| | ||| ||||||| |
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| T |
16863445 |
aagtgtcacaagctgggacactatcaaaatgaatgtcctctatgggaagaaaatgcacactatgttgagtttgaagatggtgaattgcttctgatggctc |
16863544 |
T |
|
| Q |
138 |
aaacatgattgaacacaaatgccaaagatgaggtatggtttcttgattaaggttattataatcatatgataggaacaaaggattggttatttgattttga |
237 |
Q |
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| T |
16863545 |
aatcatgtttgaacacaaatgccaaagatgaggtatggtttcttgattcaggttgttcaaaccatatgataggaacaaaagattggctatttgattttga |
16863644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 238
Target Start/End: Original strand, 20542372 - 20542572
Alignment:
| Q |
38 |
aagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaacaaattcaaattatgctgaatttaaagaaggtgaatttcatctcatggctc |
137 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||| |||||||||| |||| | || | |||||| ||| |||| |||||||| | ||| ||||||| |
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| T |
20542372 |
aagtgtcacaagctgggacactatcagaatgagtgtcctctatgggaagaaaatgctaactttgctgagtttgaagatggtgaattacttcttatggctc |
20542471 |
T |
|
| Q |
138 |
aaacatgattgaacacaaatgccaaagatgaggtatggtttcttgattaaggttattataatcatatgataggaacaaaggattggttatttgattttga |
237 |
Q |
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|| | || ||||||||||| |||||||||||||||||||||||||||| || | || |||||||||||||||||||| || ||| ||||||||||||| |
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| T |
20542472 |
aatcttgcttgaacacaaacgccaaagatgaggtatggtttcttgattttggctgttcaaatcatatgataggaacaaatgagtggctatttgattttga |
20542571 |
T |
|
| Q |
238 |
t |
238 |
Q |
| |
|
| |
|
|
| T |
20542572 |
t |
20542572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 602353 - 602397
Alignment:
| Q |
197 |
aatcatatgataggaacaaaggattggttatttgattttgatgat |
241 |
Q |
| |
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||||||||| |||||||||| || ||||||||||||||||||||| |
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| T |
602353 |
aatcatatggtaggaacaaaagagtggttatttgattttgatgat |
602397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 238
Target Start/End: Complemental strand, 40612939 - 40612738
Alignment:
| Q |
37 |
taagtgtcacaagctaggacactatcagaatgaatgtcatctatgggaaacaaattcaaattatgctgaatttaaagaaggtgaatttcatctcatggct |
136 |
Q |
| |
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|||||||| |||| | |||||||| |||||||| |||| |||||||||| |||| | || | |||| | ||| |||| |||||||| | ||| ||||| |
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| T |
40612939 |
taagtgtcgcaagttgggacactaccagaatgagtgtcctctatgggaagaaaatgctaactttgctaagtttgaagatggtgaattacttcttatggcc |
40612840 |
T |
|
| Q |
137 |
caaacatgattgaacacaaatgccaaagatgaggtatggtttcttgattaaggttattataatcatatgataggaacaaaggattggttatttgattttg |
236 |
Q |
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||| | || ||||||||||| |||||||||||||||||||||||||||| | | || ||||||||||||||||||||||| ||| |||||||||||| |
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| T |
40612839 |
caatcttgcttgaacacaaacgccaaagatgaggtatggtttcttgattctagctgttcaaatcatatgataggaacaaaggagtggctatttgattttg |
40612740 |
T |
|
| Q |
237 |
at |
238 |
Q |
| |
|
|| |
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|
| T |
40612739 |
at |
40612738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 241
Target Start/End: Complemental strand, 7851919 - 7851842
Alignment:
| Q |
164 |
gatgaggtatggtttcttgattaaggttattataatcatatgataggaacaaaggattggttatttgattttgatgat |
241 |
Q |
| |
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|||||||||||||||||||||| || | ||||||||| |||||||||| || ||||| ||||||||||||||| |
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| T |
7851919 |
gatgaggtatggtttcttgattctggctgcagcaatcatatggtaggaacaaaagaatggttgtttgattttgatgat |
7851842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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