View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8103_high_15 (Length: 249)

Name: NF8103_high_15
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8103_high_15
NF8103_high_15
[»] chr5 (7 HSPs)
chr5 (12-242)||(227562-227792)
chr5 (76-219)||(8938912-8939053)
chr5 (82-158)||(7449851-7449927)
chr5 (189-224)||(26348140-26348175)
chr5 (77-156)||(30827131-30827209)
chr5 (85-158)||(4477257-4477330)
chr5 (78-114)||(29278988-29279024)
[»] chr1 (6 HSPs)
chr1 (73-149)||(8019017-8019093)
chr1 (78-224)||(43344397-43344538)
chr1 (73-224)||(2612610-2612759)
chr1 (103-224)||(18246138-18246257)
chr1 (161-242)||(14255063-14255144)
chr1 (189-221)||(16050392-16050424)
[»] chr4 (6 HSPs)
chr4 (76-174)||(10981911-10982006)
chr4 (105-220)||(12683784-12683898)
chr4 (101-219)||(47253277-47253394)
chr4 (84-158)||(17121604-17121678)
chr4 (77-127)||(3982729-3982779)
chr4 (84-220)||(19809700-19809835)
[»] scaffold0034 (1 HSPs)
scaffold0034 (81-157)||(18425-18501)
[»] chr7 (7 HSPs)
chr7 (84-220)||(9573384-9573518)
chr7 (75-167)||(12004728-12004820)
chr7 (101-216)||(9135335-9135449)
chr7 (189-225)||(21161235-21161271)
chr7 (187-224)||(2226638-2226675)
chr7 (189-242)||(13292184-13292237)
chr7 (161-242)||(34854220-34854301)
[»] chr8 (2 HSPs)
chr8 (78-223)||(30477637-30477782)
chr8 (101-224)||(21416733-21416855)
[»] scaffold0022 (1 HSPs)
scaffold0022 (75-158)||(69174-69256)
[»] chr2 (9 HSPs)
chr2 (73-158)||(17672032-17672116)
chr2 (102-220)||(12127638-12127755)
chr2 (102-219)||(45714995-45715111)
chr2 (73-158)||(17658020-17658104)
chr2 (73-114)||(23257885-23257926)
chr2 (82-158)||(17626960-17627035)
chr2 (104-212)||(24499796-24499903)
chr2 (86-158)||(27933704-27933776)
chr2 (104-156)||(44941996-44942047)
[»] chr6 (7 HSPs)
chr6 (101-220)||(9291994-9292111)
chr6 (83-147)||(15104236-15104299)
chr6 (77-146)||(8006905-8006974)
chr6 (104-220)||(9277278-9277392)
chr6 (73-158)||(22692152-22692237)
chr6 (85-165)||(17703689-17703769)
chr6 (73-160)||(10926840-10926927)
[»] scaffold0012 (1 HSPs)
scaffold0012 (73-147)||(149217-149291)
[»] chr3 (2 HSPs)
chr3 (187-219)||(10896103-10896135)
chr3 (187-223)||(49631519-49631555)


Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 12 - 242
Target Start/End: Original strand, 227562 - 227792
Alignment:
Q  12 gaacacgcctctctgaatcaaatatcgtgcatgtgtcctccaaccgtctcataatcacacgtcacggaggcggttattctcacacacggctatataaggg 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  227562 gaacacgcctctgtgaatcaaatatcgtgcatgtgtcctccaaccgtctcataatcacacgtcacggaggcggttattctcacacacggctatataaggg 227661  T
Q  112 tgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttgagtgctaacg 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  227662 tgagatagcttctcccctaaagtatgattcatttttcctacactttttatatacactctttctcagtttcaatggtaacttgagcgtttgagtgctaacg 227761  T
Q  212 tgcctgcagacactcttcattccaacacgaa 242  Q
    |||||||||||||||||||| ||| ||||||    
T  227762 tgcctgcagacactcttcatcccaccacgaa 227792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 8939053 - 8938912
Alignment:
Q  76 cggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttctt 175  Q
    ||||||| ||||||||||||||   |||||||| |||||  |||||||||||  || |||||||||| |||||| ||||||||  ||||||||||||||     
T  8939053 cggaggcagttattctcacacaaatctatataacggtgacttagcttcaccctcaatgtatgattcacttttcccacactttt--tacacactctttctc 8938956  T
Q  176 aatttcaatggtaacttgagcgtttgagtgctaacgtgcctgca 219  Q
    | || ||||  | ||| |||| || ||||| |||||||||||||    
T  8938955 agttccaatactgactagagcattggagtgttaacgtgcctgca 8938912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 7449927 - 7449851
Alignment:
Q  82 cggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    ||||||||||||||||||  |||||||||||||  |||||||||| || | |||||||||| |||||| ||| ||||    
T  7449927 cggttattctcacacacgcatatataagggtgacttagcttcacctctgatgtatgattcacttttcccacattttt 7449851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 26348140 - 26348175
Alignment:
Q  189 acttgagcgtttgagtgctaacgtgcctgcagacac 224  Q
    ||||||||||| ||||||||||||||||||||||||    
T  26348140 acttgagcgttggagtgctaacgtgcctgcagacac 26348175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 156
Target Start/End: Complemental strand, 30827209 - 30827131
Alignment:
Q  77 ggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactt 156  Q
    ||||||| || |||||||| ||| |||||||||||  |  |||||||||||| || |||||||||| |||||||||||||    
T  30827209 ggaggcgattgttctcacagacgcctatataagggcaacttagcttcacccc-aaggtatgattcacttttcctacactt 30827131  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 158
Target Start/End: Complemental strand, 4477330 - 4477257
Alignment:
Q  85 ttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    ||||||||||||| | ||||||||||||||  |||||||||||| || ||  |||||| || ||| ||||||||    
T  4477330 ttattctcacacatgcctatataagggtgacttagcttcacccccaaggtccgattcacttctcccacactttt 4477257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 29278988 - 29279024
Alignment:
Q  78 gaggcggttattctcacacacggctatataagggtga 114  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  29278988 gaggcggttattctcagacacgcctatataagggtga 29279024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 8019093 - 8019017
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcc 149  Q
    |||||||| |||||||||||||||||| |||||||||||||| ||||||||||||| || |||||||||| ||||||    
T  8019093 tcacggagacggttattctcacacacgcctatataagggtgacatagcttcacccccaaggtatgattcacttttcc 8019017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 43344397 - 43344538
Alignment:
Q  78 gaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaa 177  Q
    ||||| ||||||||||||||    |||||||||||||| || ||||||||  || |||||||||| ||||||  |||||||||  |||||||||||| |     
T  43344397 gaggcagttattctcacacattcttatataagggtgagttaacttcaccc--aatgtatgattcacttttcccccacttttta--cacactctttct-ag 43344491  T
Q  178 tttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacac 224  Q
    |||||||  | ||||||||||| ||||||||||||  ||||||||||    
T  43344492 tttcaatactgacttgagcgttcgagtgctaacgtttctgcagacac 43344538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 224
Target Start/End: Original strand, 2612610 - 2612759
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactcttt 172  Q
    ||||||||||   |||||| ||||||| ||||||||||||||| |||||||| ||  || |||||||||||||||  | | | |||| |||||||||||     
T  2612610 tcacggaggcatatattcttacacacgtctatataagggtgagttagcttcatcctcaaggtatgattcattttt--tccgcattttttacacactcttc 2612707  T
Q  173 cttaatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacac 224  Q
    || | || ||||  | |||||||||||| | | |||||||| ||||||||||    
T  2612708 ctcagttccaatactgacttgagcgtttcaatactaacgtgtctgcagacac 2612759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 224
Target Start/End: Complemental strand, 18246257 - 18246138
Alignment:
Q  103 atataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttga 202  Q
    ||||||||||||  || ||||||||  || |||||| ||| |||||  |||||||||||  ||||||||||| ||||  |||  | ||||||||||| ||    
T  18246257 atataagggtgacttatcttcaccctcaaggtatgaatcacttttctcacactttttat--acactctttctcaattctaatactcacttgagcgttgga 18246160  T
Q  203 gtgctaacgtgcctgcagacac 224  Q
    ||| |||||||| | |||||||    
T  18246159 gtgttaacgtgcttacagacac 18246138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 14255063 - 14255144
Alignment:
Q  161 tacacactctttcttaatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaacacgaa 242  Q
    |||||||||||||| | ||||| |  | ||||||||||| |||||||| ||||| ||||| ||| |||| ||||| ||||||    
T  14255063 tacacactctttctcagtttcattaatgacttgagcgttggagtgctatcgtgcttgcaggcacccttcgttccaccacgaa 14255144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 16050424 - 16050392
Alignment:
Q  189 acttgagcgtttgagtgctaacgtgcctgcaga 221  Q
    ||||||||||| |||||||||||||||||||||    
T  16050424 acttgagcgttggagtgctaacgtgcctgcaga 16050392  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 10982006 - 10981911
Alignment:
Q  76 cggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttct 174  Q
    |||||||||||||||||||||||| ||||||||||||||  ||| ||| |||| || |||||||||| |||||| ||||||||  ||||||||||||||    
T  10982006 cggaggcggttattctcacacacgtctatataagggtgacttagtttctcccc-aatgtatgattcacttttcccacactttt--tacacactctttct 10981911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 220
Target Start/End: Complemental strand, 12683898 - 12683784
Alignment:
Q  105 ataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttgag 203  Q
    ||||||||||  | ||||||||| ||| |||||||||| ||||| | ||||||| ||  |||||||||||| | ||||| |  ||||||||||||| |||    
T  12683898 ataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacactttcta--cacactctttctcagtttcattactaacttgagcgttggag 12683801  T
Q  204 tgctaacgtgcctgcag 220  Q
    |||||||||||||||||    
T  12683800 tgctaacgtgcctgcag 12683784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 219
Target Start/End: Complemental strand, 47253394 - 47253277
Alignment:
Q  101 ctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtt 199  Q
    ||||||||||||||  |||||||||||  || |||||||||| ||||| | ||||||||  |||||||||||||| | || || |  | |||||||||||    
T  47253394 ctatataagggtgacttagcttcaccctcaaggtatgattcacttttcacaacactttt--tacacactctttctcagttccattactgacttgagcgtt 47253297  T
Q  200 tgagtgctaacgtgcctgca 219  Q
     |||||||||| ||||||||    
T  47253296 ggagtgctaacatgcctgca 47253277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 17121604 - 17121678
Alignment:
Q  84 gttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    ||||||| |||||||| ||||||||||||||  || ||||||||| || |||| ||||| |||||| ||||||||    
T  17121604 gttattcacacacacgtctatataagggtgatttaacttcacccccaaggtattattcacttttcccacactttt 17121678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 3982779 - 3982729
Alignment:
Q  77 ggaggcggttattctcacacacggctatataagggtgagatagcttcaccc 127  Q
    |||||||||||||| |||||||| ||||| ||||||||  |||||||||||    
T  3982779 ggaggcggttattcccacacacgcctatagaagggtgacttagcttcaccc 3982729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 19809835 - 19809700
Alignment:
Q  84 gttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttca 182  Q
    ||||||||||| | || |||| |||||||||  ||| |||||||  || |||| ||||| ||||| | ||||||| ||  |||||||||||||| |||||    
T  19809835 gttattctcacgcgcgcctatgtaagggtgacttagtttcaccctcaaggtataattcacttttcacaacactttcta--cacactctttcttagtttca 19809738  T
Q  183 atggtaacttgagcgtttgagtgctaacgtgcctgcag 220  Q
     |  | ||||||||||| |||||||||| || ||||||    
T  19809737 ttactgacttgagcgttggagtgctaacatgtctgcag 19809700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 18425 - 18501
Alignment:
Q  81 gcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacacttt 157  Q
    ||||||||||||||||||  ||||||||||||||  |||||||| ||| || ||||||||||||||| |||||||||    
T  18425 gcggttattctcacacacacctatataagggtgacttagcttcaacccgaaggtatgattcattttttctacacttt 18501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 9573384 - 9573518
Alignment:
Q  84 gttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaa 183  Q
    |||||||| |||||   ||||||||||||||  |||||||||| | || ||||||||||| ||||| |||||| |  |||||||||||||| | || | |    
T  9573384 gttattcttacacattcctatataagggtgacttagcttcacctccaatgtatgattcatgtttcccacacttct--tacacactctttctcagttccca 9573481  T
Q  184 tggtaacttgagcgtttgagtgctaacgtgcctgcag 220  Q
    |  | ||||| ||||| ||||||||||||||||||||    
T  9573482 tattgacttgtgcgttggagtgctaacgtgcctgcag 9573518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 167
Target Start/End: Original strand, 12004728 - 12004820
Alignment:
Q  75 acggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacac 167  Q
    ||||| || |||||||||||||||| ||||||||||||||  |||||||||| | || | |||||| | |||||| |||||||||| ||||||    
T  12004728 acggaagcagttattctcacacacgcctatataagggtgacttagcttcacctcaaagggatgattgacttttcccacactttttacacacac 12004820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 9135335 - 9135449
Alignment:
Q  101 ctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtt 199  Q
    ||||||||||||||  | |||||||||  || |||||||||| ||||| | ||| ||||||  |||||||||||| |||| || |  | |||||||||||    
T  9135335 ctatataagggtgaatttgcttcaccctcaaggtatgattcacttttcacaacagttttta--cacactctttctcaattccattactgacttgagcgtt 9135432  T
Q  200 tgagtgctaacgtgcct 216  Q
     ||||||||||||||||    
T  9135433 agagtgctaacgtgcct 9135449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 21161271 - 21161235
Alignment:
Q  189 acttgagcgtttgagtgctaacgtgcctgcagacact 225  Q
    ||||||||||| |||||||||||||||||||||||||    
T  21161271 acttgagcgttggagtgctaacgtgcctgcagacact 21161235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 2226675 - 2226638
Alignment:
Q  187 taacttgagcgtttgagtgctaacgtgcctgcagacac 224  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  2226675 taacttgagcgttggagtgctaatgtgcctgcagacac 2226638  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 13292184 - 13292237
Alignment:
Q  189 acttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaacacgaa 242  Q
    ||||||||||| |||||||||||| |||||||||||  ||| ||||| ||||||    
T  13292184 acttgagcgttagagtgctaacgtacctgcagacacctttccttccaccacgaa 13292237  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 34854301 - 34854220
Alignment:
Q  161 tacacactctttcttaatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagacactcttcattccaacacgaa 242  Q
    |||||||||||||| | ||||| |  ||||||||||||  ||||||||||||| ||||| ||||  ||| ||||| ||||||    
T  34854301 tacacactctttctcagtttcattactaacttgagcgtcagagtgctaacgtgtctgcaaacaccgttcgttccaccacgaa 34854220  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 223
Target Start/End: Complemental strand, 30477782 - 30477637
Alignment:
Q  78 gaggcggttattctc-acacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttctt 175  Q
    ||||||||||||||| || |||| |||||||||||||| ||  ||||||||  || |||||||||| ||||| | ||||||| ||  ||||||||||||     
T  30477782 gaggcggttattctcgacgcacgcctatataagggtgacattacttcaccctcaaggtatgattcacttttcacaacactttcta--cacactctttctc 30477685  T
Q  176 aatttcaatggtaacttgagcgtttgagtgctaacgtgcctgcagaca 223  Q
    | ||||  |  | ||||||||||| |||||||||||||| ||||||||    
T  30477684 agtttcgttactgacttgagcgttggagtgctaacgtgcatgcagaca 30477637  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 224
Target Start/End: Complemental strand, 21416855 - 21416733
Alignment:
Q  101 ctatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgtt 199  Q
    ||||| ||||||||  | ||||||||| ||| ||| |||||||||||| | ||||||| ||  |||||||||||| | ||||| |  | ||||||||||     
T  21416855 ctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaacactttcta--cacactctttctcagtttcattactgacttgagcgtc 21416758  T
Q  200 tgagtgctaacgtgcctgcagacac 224  Q
     ||||||||||| || |||||||||    
T  21416757 ggagtgctaacgagcatgcagacac 21416733  T

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Target: scaffold0022 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 69174 - 69256
Alignment:
Q  75 acggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    |||||| ||||||||||| |||||| |||||||||||||| ||||||||| ||| |  |||||||||| |||||| ||||||||    
T  69174 acggagacggttattctctcacacgcctatataagggtgacatagcttcagccc-agggtatgattcaattttcccacactttt 69256  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 17672116 - 17672032
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    |||| ||| |||||||||||| ||||| |||| |||||||||  |||||||||||| || |||||||||| |||||| ||||||||    
T  17672116 tcacagagacggttattctcatacacgcctatttaagggtgacttagcttcacccc-aaggtatgattcacttttcccacactttt 17672032  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 12127638 - 12127755
Alignment:
Q  102 tatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgttt 200  Q
    ||||||||| ||| || |||||||| | ||||||||||||| ||||| | ||||||| || ||||||   |||||| ||||| |  | |||||||||||     
T  12127638 tatataaggttgacattgcttcaccaccaaagtatgattcacttttcacaacactttctacacacacg--ttcttagtttcattactgacttgagcgttg 12127735  T
Q  201 gagtgctaacgtgcctgcag 220  Q
    ||||||||||||||||||||    
T  12127736 gagtgctaacgtgcctgcag 12127755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 219
Target Start/End: Complemental strand, 45715111 - 45714995
Alignment:
Q  102 tatataagggtgagatagcttcacccctaaagtatgattcatttttc-ctacactttttatacacactctttcttaatttcaatggtaacttgagcgttt 200  Q
    |||| ||||||||  ||||||||||   || |||||||||| ||||| | ||||||||||  |||||||||||| | ||||| |  | |||||||||||     
T  45715111 tatacaagggtgacttagcttcaccttcaaggtatgattcaattttcaccacacttttta--cacactctttctcagtttcattactgacttgagcgttg 45715014  T
Q  201 gagtgctaacgtgcctgca 219  Q
    |||||||||||||||||||    
T  45715013 gagtgctaacgtgcctgca 45714995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 17658104 - 17658020
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    |||| ||| |||||||||||| ||||| |||| |||||||||  |||||||||||| || |||||||||| ||||||  |||||||    
T  17658104 tcacagagacggttattctcatacacgcctatttaagggtgacttagcttcacccc-aaggtatgattcacttttcccgcactttt 17658020  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 23257926 - 23257885
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtga 114  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  23257926 tcacggagacggttattctcacacacgcctatataagggtga 23257885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 17627035 - 17626960
Alignment:
Q  82 cggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    |||||||||||| ||||| |||| |||||||||  |||||||||||| || |||||||||| |||| | ||||||||    
T  17627035 cggttattctcatacacgcctatttaagggtgacttagcttcacccc-aaggtatgattcactttttccacactttt 17626960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 24499903 - 24499796
Alignment:
Q  104 tataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttgag 203  Q
    |||||||||||  | ||||||||| ||| |||||||||| |||||  | || |||| |||||||||||||| | || || |  | ||||||||||| |||    
T  24499903 tataagggtgaacttgcttcacccttaaggtatgattcacttttcaca-acattttctacacactctttctcatttccattactgacttgagcgttggag 24499805  T
Q  204 tgctaacgt 212  Q
    |||||||||    
T  24499804 tgctaacgt 24499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 158
Target Start/End: Original strand, 27933704 - 27933776
Alignment:
Q  86 tattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    |||||||||||||| |||||||| ||| |  || ||||||| | || |||||||||| |||||| ||||||||    
T  27933704 tattctcacacacgtctatataaaggtaacttaacttcacctccaaggtatgattcacttttcccacactttt 27933776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 104 - 156
Target Start/End: Complemental strand, 44942047 - 44941996
Alignment:
Q  104 tataagggtgagatagcttcacccctaaagtatgattcatttttcctacactt 156  Q
    |||||||||||  |||||||||||| ||||||||||||  |||||||||||||    
T  44942047 tataagggtgacttagcttcacccc-aaagtatgattcgcttttcctacactt 44941996  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 101 - 220
Target Start/End: Original strand, 9291994 - 9292111
Alignment:
Q  101 ctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgttt 200  Q
    |||||||| |||||| |||||||||||  || |||||||||| |||||| ||||||||  |||| ||| ||||| | || ||||  | |||||||||||     
T  9291994 ctatataaaggtgagttagcttcaccctcaaggtatgattcacttttcccacactttt--tacatactatttctcagttccaatactgacttgagcgtta 9292091  T
Q  201 gagtgctaacgtgcctgcag 220  Q
    | |||||||||||| |||||    
T  9292092 gcgtgctaacgtgcttgcag 9292111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 147
Target Start/End: Original strand, 15104236 - 15104299
Alignment:
Q  83 ggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcattttt 147  Q
    ||||||||||||||||| |||||||||||||   |||||||||||| ||||||||||||| ||||    
T  15104236 ggttattctcacacacgcctatataagggtggcttagcttcacccc-aaagtatgattcactttt 15104299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 8006905 - 8006974
Alignment:
Q  77 ggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttt 146  Q
    |||| ||||||||||| |||||||| ||| ||||||||  |||||||||||| || ||||||||| ||||    
T  8006905 ggagacggttattctctcacacggcaataaaagggtgacttagcttcacccccaatgtatgattcctttt 8006974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 220
Target Start/End: Original strand, 9277278 - 9277392
Alignment:
Q  104 tataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacacactctttcttaatttcaatggtaacttgagcgtttgag 203  Q
    |||||||||||| |||||||||||  || |||||||||| |||  | ||||||||  |||| ||||||||| | || ||||  | |||||||||||  ||    
T  9277278 tataagggtgagttagcttcaccctcaaggtatgattcactttctccacactttt--tacatactctttctcagttccaatactgacttgagcgttatag 9277375  T
Q  204 tgctaacgtgcctgcag 220  Q
    |||||||||| ||||||    
T  9277376 tgctaacgtgtctgcag 9277392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 22692237 - 22692152
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttt 158  Q
    |||||| | |||||||||||||||||  |||||||| |||||  |||||||||||  ||  ||||||||| |||||| ||||||||    
T  22692237 tcacggggacggttattctcacacacacctatataaaggtgacttagcttcaccctcaagttatgattcacttttcccacactttt 22692152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 165
Target Start/End: Original strand, 17703689 - 17703769
Alignment:
Q  85 ttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacactttttatacac 165  Q
    |||||||||||| || |||||||||||||||||  |||||||| ||| ||| |||||| |||||  | |||||||| ||||    
T  17703689 ttattctcacactcgcctatataagggtgagatttcttcacccgtaaggtacgattcacttttctcatactttttacacac 17703769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 160
Target Start/End: Original strand, 10926840 - 10926927
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcatttttcctacacttttta 160  Q
    |||| ||||| ||||||||||| |||  |||||||||||  || |||||||||||| ||  ||| ||||| |||||| ||||||||||    
T  10926840 tcacagaggcagttattctcacccacacctatataagggcaagttagcttcacccccaagatataattcacttttcccacacttttta 10926927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 149291 - 149217
Alignment:
Q  73 tcacggaggcggttattctcacacacggctatataagggtgagatagcttcacccctaaagtatgattcattttt 147  Q
    ||||||| |||||||||||  |||||  ||||||||||||||  || ||||||||| || |||||||||| ||||    
T  149291 tcacggaagcggttattctagcacacacctatataagggtgacttaacttcacccccaaggtatgattcactttt 149217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 10896135 - 10896103
Alignment:
Q  187 taacttgagcgtttgagtgctaacgtgcctgca 219  Q
    ||||||||||||| |||||||||||||||||||    
T  10896135 taacttgagcgttggagtgctaacgtgcctgca 10896103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Complemental strand, 49631555 - 49631519
Alignment:
Q  187 taacttgagcgtttgagtgctaacgtgcctgcagaca 223  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  49631555 taacttgagcgttagagtgttaacgtgcctgcagaca 49631519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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