View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8103_high_19 (Length: 243)
Name: NF8103_high_19
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8103_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 31225744 - 31225975
Alignment:
| Q |
1 |
gcgattgtatcggattacaggctcataactcgctactgtcacagcctttagaatccttgtggagttgctagttggttttgttgttttgggcttcggtgta |
100 |
Q |
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| T |
31225744 |
gcgattgtatcggattacaggctcataactcgctactgtcacagcctttagaatccttgtggagttgctagttggttttgttggtttgggcttcggtgta |
31225843 |
T |
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| Q |
101 |
ccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggagttggcgttaataaattttgccgattcnnnnnnnnnnnnnnc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
31225844 |
ccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggggttggcgttaataaattttgccgattcaaaaagtaaaaaaac |
31225943 |
T |
|
| Q |
201 |
taggaaacatgcacatgtgttttatttttctt |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31225944 |
taggaaacatgcacatgtgttttatttttctt |
31225975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 22851819 - 22851871
Alignment:
| Q |
132 |
tgtcgtccataccttgcgtcttgcggagttggcgttaataaattttgccgatt |
184 |
Q |
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| T |
22851819 |
tgtcgtccatatcttgcgtcttgcggggtcggcgttaataaatttttccgatt |
22851871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 29903466 - 29903517
Alignment:
| Q |
134 |
tcgtccataccttgcgtcttgcggagttggcgttaataaattttgccgattc |
185 |
Q |
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| T |
29903466 |
tcgtccattccttgcgccttgcggggttggcgctaataaattttgccgattc |
29903517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 31971873 - 31971783
Alignment:
| Q |
95 |
ggtgtaccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggagttggcg-ttaataaattttgccgattc |
185 |
Q |
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| T |
31971873 |
ggtgtaccgtctatatgcggcaccatttgtatc-ttgtttcgtccataccttgcgtcttgcggggatggcgtttaataatatttgccgattc |
31971783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 11378821 - 11378788
Alignment:
| Q |
134 |
tcgtccataccttgcgtcttgcggagttggcgtt |
167 |
Q |
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| T |
11378821 |
tcgtccataccttgcgtcttgcggggttggcgtt |
11378788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 41310100 - 41309920
Alignment:
| Q |
4 |
attgtatcggattacaggctcataactcgcta--ctgtcacagcctttagaatccttgtggagttgctagttggttttgttgttttgggcttcggtgtac |
101 |
Q |
| |
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|||||| |||||||||||||||||||| |||| ||||||||| ||| | ||||||||||| ||| ||| | | |||||||| || ||||||| |
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| T |
41310100 |
attgtaccggattacaggctcataacttgctatactgtcacagtttttgggttccttgtggagg----agtctgttatttcgttttggggttgggtgtac |
41310005 |
T |
|
| Q |
102 |
cgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggagttggcgtt-aataaattttgccgattc |
185 |
Q |
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||||||| |||| ||||| ||| ||||||| || ||||||| ||||||||| ||||||||| |||||||||||| ||||| |
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| T |
41310004 |
tctctatatgcggcatcttttgtatctttatgtcatctataccttacgtcttgcgaggttggcgtttaataaattttgctgattc |
41309920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 37158687 - 37158735
Alignment:
| Q |
134 |
tcgtccataccttgcgtcttgcggagttggcgttaataaattttgccga |
182 |
Q |
| |
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|||||||||||||||||||||||| | ||||||| |||| |||||||| |
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| T |
37158687 |
tcgtccataccttgcgtcttgcggggatggcgtttataatatttgccga |
37158735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 14437005 - 14436934
Alignment:
| Q |
95 |
ggtgtaccgtctatatatggcaccttttatattgttatgtcgtccataccttgcgtcttgcggagttggcgtt |
167 |
Q |
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| T |
14437005 |
ggtgtaccgtctatatgcggcaccatttgtatc-ttgtttcgtccataccttgcgtcttgcggggatggcgtt |
14436934 |
T |
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