View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8103_high_5 (Length: 376)

Name: NF8103_high_5
Description: NF8103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8103_high_5
NF8103_high_5
[»] chr1 (1 HSPs)
chr1 (10-376)||(42156398-42156764)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 10 - 376
Target Start/End: Original strand, 42156398 - 42156764
Alignment:
Q  10 gagaagaatgggaaaggtatctcaaacaaaatttatacatctaatcaaaggaaaactatttagattgacaatcatcaaagaagaactttattaaacacta 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42156398 gagaagaatgggaaaggtatctcaaacaaaatttatacatctaatcaaaggaaaactatttagattgacaatcatcaaagaagaactttattaaacacta 42156497  T
Q  110 acattgtgaaagcttgatcaaataatgataggcacacatgtttattatttcattatgttcaagctcatagnnnnnnncatttcaaaattcaaataagtcc 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  42156498 acattgtgaaagcttgatcaaataatgataggcacacatgtttattatttcattatgttcaagctcatagaaaaaaacatttcaaaattcaaataagtcc 42156597  T
Q  210 taattcacactttgggttctcttttagccaagtctttttgtggcataaagacatgttgctattgtctgcaaaattagcaggcattctttctattttaaat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42156598 taattcacactttgggttctcttttagccaagtctttttgtggcataaagacatgttgctattgtctgcaaaattagcaggcattctttctattttaaat 42156697  T
Q  310 gaactccactcatctccccatgtggggcatttgggtattttgagaaaacagaacaaatatggagaag 376  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  42156698 gaactccactcatctccccatgtggggcatttgggtattgtgagaaaacagaacaaatatggagaag 42156764  T

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